Variant report

Variant	rs9880194
Chromosome Location	chr3:82369456-82369457
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1079887	0.84[AMR][1000 genomes]
rs11127766	0.87[ASN][1000 genomes]
rs11916850	0.81[EUR][1000 genomes]
rs11921228	0.81[EUR][1000 genomes]
rs12488263	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12631263	0.86[ASN][1000 genomes]
rs13067300	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1349259	0.81[EUR][1000 genomes]
rs1449852	0.81[EUR][1000 genomes]
rs1900993	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs28416064	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs35905694	0.86[ASN][1000 genomes]
rs4283593	0.86[ASN][1000 genomes]
rs4339124	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4364188	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4555547	0.87[ASN][1000 genomes]
rs4856386	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs5016049	0.86[ASN][1000 genomes]
rs6783087	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6786551	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6809919	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7622748	0.85[ASN][1000 genomes]
rs7626945	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9826207	0.83[AMR][1000 genomes]
rs9830712	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9831297	0.83[AMR][1000 genomes]
rs9848200	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9848744	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9867012	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9869128	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008429	chr3:82089650-82510536	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv432460	chr3:82107110-82508010	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1013820	chr3:82175705-82968181	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv523771	chr3:82363196-82412694	Enhancers Active TSS Weak transcription Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
5	nsv965182	chr3:82367838-82375765	Enhancers	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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