Variant report

Variant	rs1079887
Chromosome Location	chr3:82406431-82406432
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1074952	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11916850	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11921228	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13067300	0.91[AMR][1000 genomes]
rs1349259	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1449851	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1449852	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1900993	0.88[CHB][hapmap]
rs4306886	0.81[ASN][1000 genomes]
rs4314191	0.81[ASN][1000 genomes]
rs4339123	0.81[ASN][1000 genomes]
rs4518153	0.81[ASN][1000 genomes]
rs4856386	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6778876	0.81[ASN][1000 genomes]
rs6779320	0.81[ASN][1000 genomes]
rs6793570	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6796468	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6809919	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7626945	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9811672	0.81[ASN][1000 genomes]
rs9826207	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9830712	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9831297	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9841577	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9848200	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9848744	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9855963	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9866870	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9868358	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9869128	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9880194	0.81[CEU][hapmap];0.94[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008429	chr3:82089650-82510536	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv432460	chr3:82107110-82508010	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1013820	chr3:82175705-82968181	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv523771	chr3:82363196-82412694	Enhancers Active TSS Weak transcription Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:82406200-82412600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr3:82406400-82407600	Weak transcription	HUES48 Cell Line	embryonic stem cell

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