Variant report

Variant	rs4306886
Chromosome Location	chr3:82292706-82292707
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1074952	0.81[ASN][1000 genomes]
rs1079887	0.81[ASN][1000 genomes]
rs11127766	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11916850	0.81[ASN][1000 genomes]
rs11921228	0.81[ASN][1000 genomes]
rs12488263	0.85[EUR][1000 genomes]
rs12631263	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13059618	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1349259	0.81[ASN][1000 genomes]
rs1449851	0.81[ASN][1000 genomes]
rs1449852	0.81[ASN][1000 genomes]
rs28416064	0.87[EUR][1000 genomes]
rs35905694	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4283593	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4314191	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4339123	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4339124	0.91[EUR][1000 genomes]
rs4364188	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4518153	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4555547	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs5016049	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6778876	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6779320	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7615603	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7622748	0.88[EUR][1000 genomes]
rs9811672	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9826207	0.81[ASN][1000 genomes]
rs9868358	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007167	chr3:82050178-82301466	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv877041	chr3:82074024-82363196	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1008429	chr3:82089650-82510536	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv432460	chr3:82107110-82508010	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv1013820	chr3:82175705-82968181	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv877043	chr3:82198467-82311711	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS	lncRNA	4 gene(s)	inside rSNPs	diseases
7	esv3329034	chr3:82292667-82293138	Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:82292600-82293200	Enhancers	Fetal Heart	heart

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