Variant report

Variant	rs6778876
Chromosome Location	chr3:82341713-82341714
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1074952	0.81[ASN][1000 genomes]
rs1079887	0.81[ASN][1000 genomes]
rs11127766	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11916850	0.81[ASN][1000 genomes]
rs11921228	0.81[ASN][1000 genomes]
rs12488263	0.81[EUR][1000 genomes]
rs12631263	0.87[EUR][1000 genomes]
rs13059618	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1349259	0.81[ASN][1000 genomes]
rs1449851	0.81[ASN][1000 genomes]
rs1449852	0.81[ASN][1000 genomes]
rs1900993	0.85[CEU][hapmap];0.87[CHB][hapmap]
rs28416064	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35905694	0.85[EUR][1000 genomes]
rs4283593	0.84[EUR][1000 genomes]
rs4306886	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4314191	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4339123	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4339124	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4364188	0.85[EUR][1000 genomes]
rs4518153	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4555547	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs5016049	0.87[EUR][1000 genomes]
rs6779320	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7615603	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7622748	0.82[EUR][1000 genomes]
rs9811672	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9814230	0.84[AMR][1000 genomes]
rs9826207	0.81[ASN][1000 genomes]
rs9868358	0.81[ASN][1000 genomes]
rs9880194	0.85[CEU][hapmap];0.94[CHB][hapmap];0.90[GIH][hapmap];0.89[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877041	chr3:82074024-82363196	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1008429	chr3:82089650-82510536	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv432460	chr3:82107110-82508010	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv1013820	chr3:82175705-82968181	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:82341400-82342000	Weak transcription	GM12878-XiMat	blood

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