Variant report
| Variant | rs4339123 |
|---|---|
| Chromosome Location | chr3:82342972-82342973 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:82338513..82340160-chr3:82342810..82345015,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs1074952 | 0.81[ASN][1000 genomes] |
| rs1079887 | 0.81[ASN][1000 genomes] |
| rs11127766 | 0.84[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs11916850 | 0.81[ASN][1000 genomes] |
| rs11921228 | 0.81[ASN][1000 genomes] |
| rs12488263 | 0.81[EUR][1000 genomes] |
| rs12631263 | 0.87[EUR][1000 genomes] |
| rs13059618 | 0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs1349259 | 0.81[ASN][1000 genomes] |
| rs1449851 | 0.81[ASN][1000 genomes] |
| rs1449852 | 0.81[ASN][1000 genomes] |
| rs1900993 | 0.88[CHB][hapmap] |
| rs28416064 | 0.89[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs35905694 | 0.85[EUR][1000 genomes] |
| rs4283593 | 0.84[EUR][1000 genomes] |
| rs4306886 | 0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs4314191 | 0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs4339124 | 0.84[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs4364188 | 0.85[EUR][1000 genomes] |
| rs4518153 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4555547 | 0.84[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs5016049 | 0.87[EUR][1000 genomes] |
| rs6778876 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6779320 | 1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs7615603 | 0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs7622748 | 0.82[EUR][1000 genomes] |
| rs9811672 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9814230 | 0.84[AMR][1000 genomes] |
| rs9826207 | 0.81[ASN][1000 genomes] |
| rs9868358 | 0.81[ASN][1000 genomes] |
| rs9880194 | 0.94[CHB][hapmap] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv877041 | chr3:82074024-82363196 | Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer | Chromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv1008429 | chr3:82089650-82510536 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 3 | nsv432460 | chr3:82107110-82508010 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 4 | nsv1013820 | chr3:82175705-82968181 | Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:82342000-82343400 | Enhancers | GM12878-XiMat | blood |
