Variant report

Variant	rs4555547
Chromosome Location	chr3:82310104-82310105
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11127766	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12488263	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12631263	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13059618	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1900993	0.94[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs28416064	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35905694	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4283593	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4306886	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4314191	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4339123	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4339124	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4364188	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4518153	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs5016049	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6778876	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6779320	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7615603	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7622748	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9811672	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9880194	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877041	chr3:82074024-82363196	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1008429	chr3:82089650-82510536	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv432460	chr3:82107110-82508010	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv1013820	chr3:82175705-82968181	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv877043	chr3:82198467-82311711	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS	lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:82309400-82310400	Enhancers	Liver	Liver
2	chr3:82309600-82310800	Weak transcription	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links