Variant report

Variant	rs9869128
Chromosome Location	chr3:82404365-82404366
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1074952	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1079887	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11916850	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11921228	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13067300	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1349259	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1449851	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1449852	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1900993	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs4856386	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6783087	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6786551	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6809919	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7626945	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9826207	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9830712	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9831297	0.90[AMR][1000 genomes]
rs9848200	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9848744	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9867012	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9868358	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9880194	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008429	chr3:82089650-82510536	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv432460	chr3:82107110-82508010	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1013820	chr3:82175705-82968181	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv523771	chr3:82363196-82412694	Enhancers Active TSS Weak transcription Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:82393200-82404800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr3:82403400-82406200	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr3:82403600-82406400	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr3:82403600-82406400	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr3:82403800-82404400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr3:82403800-82405200	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr3:82403800-82405600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr3:82404000-82404600	Weak transcription	Fetal Brain Female	brain
9	chr3:82404200-82405600	Enhancers	HUES64 Cell Line	embryonic stem cell

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