Variant report

Variant	rs9867524
Chromosome Location	chr3:151050579-151050580
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10513393	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13321176	0.80[EUR][1000 genomes]
rs13322120	1.00[ASN][1000 genomes]
rs1388625	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17204437	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17204459	1.00[ASN][1000 genomes]
rs17282940	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17282947	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17304673	0.83[EUR][1000 genomes]
rs28386791	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs28734805	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs55751359	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6780660	0.89[EUR][1000 genomes]
rs6792089	0.89[EUR][1000 genomes]
rs73008504	1.00[ASN][1000 genomes]
rs73157938	0.88[EUR][1000 genomes]
rs73157954	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73157974	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73157991	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73157994	1.00[ASN][1000 genomes]
rs73158000	1.00[ASN][1000 genomes]
rs7633788	1.00[ASN][1000 genomes]
rs7633828	1.00[ASN][1000 genomes]
rs9812617	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9814936	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9817216	0.82[EUR][1000 genomes]
rs9819885	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9821749	0.82[EUR][1000 genomes]
rs9821937	0.81[EUR][1000 genomes]
rs9834154	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9838990	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9840232	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9841430	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9844557	1.00[ASN][1000 genomes]
rs9848789	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9853676	0.80[EUR][1000 genomes]
rs9854017	0.82[EUR][1000 genomes]
rs9855202	1.00[ASN][1000 genomes]
rs9856118	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9859552	1.00[ASN][1000 genomes]
rs9859854	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9864790	1.00[ASN][1000 genomes]
rs9865547	1.00[ASN][1000 genomes]
rs9868643	0.89[EUR][1000 genomes]
rs9868730	1.00[ASN][1000 genomes]
rs9872645	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9875587	0.90[EUR][1000 genomes]
rs9876268	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9876933	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9880395	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460894	chr3:150770614-151095093	Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv592045	chr3:150770614-151095093	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv2754555	chr3:150968302-151054302	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv829757	chr3:151044880-151226442	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:151045600-151056600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr3:151045600-151063600	Weak transcription	Brain Angular Gyrus	brain
3	chr3:151047000-151055200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr3:151048400-151051200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr3:151049000-151051200	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr3:151049200-151051200	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr3:151049600-151057800	Weak transcription	Primary hematopoietic stem cells	blood
8	chr3:151049800-151050600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr3:151050000-151053000	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr3:151050000-151063600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr3:151050200-151051200	Enhancers	Monocytes-CD14+_RO01746	blood
12	chr3:151050400-151051000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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