Variant report

Variant	rs9876268
Chromosome Location	chr3:151064376-151064377
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:151063727..151066442-chr3:151089515..151092440,2	K562	blood:
2	chr3:151039875..151042217-chr3:151061873..151064664,2	MCF-7	breast:

Extended variants
information (count: 62 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs1017348	0.82[CEU][hapmap]
rs10513387	0.88[CEU][hapmap]
rs10513393	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1221002	0.82[CEU][hapmap]
rs13321176	1.00[CEU][hapmap]
rs13322120	0.82[CEU][hapmap]
rs13327359	0.81[CEU][hapmap]
rs1388625	0.94[CEU][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1549829	0.94[CEU][hapmap]
rs1554120	0.88[CEU][hapmap]
rs17204437	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17204459	0.82[CEU][hapmap]
rs17282940	0.94[CEU][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17282947	1.00[CEU][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17290219	0.88[CEU][hapmap]
rs17304673	1.00[CEU][hapmap];0.90[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs1920397	0.82[CEU][hapmap]
rs28386791	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28734805	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs55751359	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6780660	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs6792089	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs73157938	0.81[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs73157954	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73157974	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73157991	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7633788	0.82[CEU][hapmap]
rs7633828	0.82[CEU][hapmap]
rs7634096	0.82[CEU][hapmap]
rs7637803	0.82[CEU][hapmap]
rs9289837	0.82[CEU][hapmap]
rs9812617	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9814936	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9817216	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs9819885	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9821749	0.81[EUR][1000 genomes]
rs9821937	1.00[CEU][hapmap]
rs9831242	1.00[CEU][hapmap]
rs9834154	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9836053	0.94[CEU][hapmap]
rs9838990	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9840232	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9841430	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9844557	0.88[CEU][hapmap]
rs9848789	1.00[CEU][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9854017	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs9855202	0.82[CEU][hapmap]
rs9856118	0.94[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9859552	0.82[CEU][hapmap]
rs9859854	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9867524	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9868643	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs9871229	0.89[AFR][1000 genomes]
rs9871624	0.94[CEU][hapmap]
rs9872645	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9875587	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs9876933	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9880395	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9881116	0.94[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460894	chr3:150770614-151095093	Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv592045	chr3:150770614-151095093	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv829757	chr3:151044880-151226442	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9876268	P2RY12	cis	normal skin	skin_eQTL

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:151063200-151066000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
2	chr3:151063200-151067200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
3	chr3:151063600-151064400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr3:151063600-151064400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr3:151063600-151064400	Active TSS	Fetal Lung	lung
6	chr3:151063600-151064400	Enhancers	NHLF	lung
7	chr3:151063600-151064600	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr3:151063600-151064600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr3:151063600-151065000	Active TSS	Primary B cells from cord blood	blood
10	chr3:151063800-151065800	Weak transcription	Brain Angular Gyrus	brain
11	chr3:151063800-151066800	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr3:151063800-151099800	Weak transcription	Fetal Intestine Small	intestine
13	chr3:151064000-151064400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr3:151064000-151064400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr3:151064000-151064400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr3:151064000-151064600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr3:151064000-151064600	Enhancers	Adipose Nuclei	Adipose
18	chr3:151064000-151065600	Weak transcription	Brain Hippocampus Middle	brain
19	chr3:151064200-151064400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr3:151064200-151064400	Enhancers	Duodenum Smooth Muscle	Duodenum
21	chr3:151064200-151064400	Enhancers	NHDF-Ad	bronchial
22	chr3:151064200-151064600	Enhancers	H9 Cell Line	embryonic stem cell
23	chr3:151064200-151064600	Enhancers	Right Atrium	heart
24	chr3:151064200-151065600	Weak transcription	Brain Anterior Caudate	brain
25	chr3:151064200-151069000	Enhancers	Primary hematopoietic stem cells	blood
26	chr3:151064200-151069800	Enhancers	Primary monocytes fromperipheralblood	blood

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