Variant report

Variant	rs9881116
Chromosome Location	chr3:150939858-150939859
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs1017348	0.84[CEU][hapmap]
rs10513387	0.94[CEU][hapmap];1.00[ASN][1000 genomes]
rs10513393	1.00[ASW][hapmap];0.94[CEU][hapmap];0.94[TSI][hapmap]
rs1221002	0.84[CEU][hapmap]
rs13321176	0.94[CEU][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13322794	0.87[CEU][hapmap];1.00[ASN][1000 genomes]
rs1388625	0.89[CEU][hapmap]
rs1549829	0.94[CEU][hapmap];1.00[ASN][1000 genomes]
rs1554120	0.94[CEU][hapmap];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17204437	1.00[ASW][hapmap];0.94[CEU][hapmap];0.89[MEX][hapmap];0.94[TSI][hapmap]
rs17204459	1.00[ASW][hapmap];1.00[MEX][hapmap]
rs17282940	1.00[ASW][hapmap];0.89[CEU][hapmap];0.89[MEX][hapmap];0.94[TSI][hapmap]
rs17282947	0.94[CEU][hapmap]
rs17290219	0.94[CEU][hapmap];1.00[ASN][1000 genomes]
rs17304673	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1920393	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1920397	0.84[CEU][hapmap]
rs28386791	0.84[EUR][1000 genomes]
rs28734805	0.80[EUR][1000 genomes]
rs28810515	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28831788	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6773020	1.00[ASN][1000 genomes]
rs6780660	0.88[EUR][1000 genomes]
rs6792089	0.94[CEU][hapmap];0.88[EUR][1000 genomes]
rs722133	1.00[ASN][1000 genomes]
rs73155751	1.00[ASN][1000 genomes]
rs73155773	1.00[ASN][1000 genomes]
rs73157938	0.88[EUR][1000 genomes]
rs73157954	0.87[EUR][1000 genomes]
rs7614811	1.00[ASN][1000 genomes]
rs9289837	1.00[ASW][hapmap];1.00[MEX][hapmap]
rs9812617	0.84[EUR][1000 genomes]
rs9814936	1.00[ASW][hapmap];0.94[CEU][hapmap];0.89[MEX][hapmap];0.94[TSI][hapmap];0.87[EUR][1000 genomes]
rs9817216	0.94[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9818251	0.92[CEU][hapmap];1.00[ASN][1000 genomes]
rs9819885	0.94[CEU][hapmap];0.89[MEX][hapmap];0.94[TSI][hapmap];0.84[EUR][1000 genomes]
rs9821749	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9821937	0.94[CEU][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9831242	0.94[CEU][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9836053	0.94[CEU][hapmap];0.88[MEX][hapmap];1.00[ASN][1000 genomes]
rs9838990	0.94[CEU][hapmap]
rs9841430	0.83[EUR][1000 genomes]
rs9844557	0.81[CEU][hapmap]
rs9848789	1.00[ASW][hapmap];0.94[CEU][hapmap];0.89[MEX][hapmap];0.94[TSI][hapmap]
rs9850762	1.00[ASN][1000 genomes]
rs9853676	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9854017	0.94[CEU][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9854126	0.88[CEU][hapmap];1.00[ASN][1000 genomes]
rs9855202	1.00[MEX][hapmap]
rs9856118	1.00[ASW][hapmap];0.89[CEU][hapmap];0.89[MEX][hapmap];0.91[TSI][hapmap]
rs9859854	0.94[CEU][hapmap];0.87[EUR][1000 genomes]
rs9868643	0.94[CEU][hapmap];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9871229	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9871624	0.94[CEU][hapmap];0.90[EUR][1000 genomes]
rs9872645	1.00[ASW][hapmap];0.94[CEU][hapmap];0.89[MEX][hapmap];0.94[TSI][hapmap]
rs9875587	0.85[EUR][1000 genomes]
rs9876268	0.94[CEU][hapmap]
rs9876933	0.94[CEU][hapmap]
rs9880395	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460894	chr3:150770614-151095093	Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv592045	chr3:150770614-151095093	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv2757897	chr3:150791625-150957485	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv2759188	chr3:150791625-150957485	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150878000-150946000	Weak transcription	Placenta	Placenta
2	chr3:150928800-150943800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr3:150928800-150946200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr3:150928800-150952800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr3:150928800-150953000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr3:150929000-150943200	Weak transcription	Psoas Muscle	Psoas
7	chr3:150929000-150945200	Weak transcription	Primary B cells from peripheral blood	blood
8	chr3:150929200-150945400	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr3:150932200-150942800	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr3:150932600-150946200	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr3:150935400-150946200	Weak transcription	Aorta	Aorta
12	chr3:150935600-150944000	Weak transcription	Fetal Stomach	stomach
13	chr3:150935600-150945200	Weak transcription	Fetal Muscle Leg	muscle
14	chr3:150935600-150945400	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr3:150937000-150942200	Weak transcription	Liver	Liver
16	chr3:150937600-150944000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr3:150937600-150944200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr3:150937800-150945200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr3:150938000-150940200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
20	chr3:150938000-150940200	Weak transcription	Hela-S3	cervix
21	chr3:150938200-150940000	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
22	chr3:150938200-150945800	Weak transcription	Fetal Heart	heart
23	chr3:150938600-150940600	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr3:150938600-150948600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr3:150939000-150940400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr3:150939200-150940000	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr3:150939200-150940000	Strong transcription	Primary hematopoietic stem cells	blood
28	chr3:150939200-150940000	ZNF genes & repeats	Fetal Intestine Small	intestine
29	chr3:150939600-150945200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr3:150939800-150940000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
31	chr3:150939800-150940400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
32	chr3:150939800-150941800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr3:150939800-150945200	Weak transcription	H1 Cell Line	embryonic stem cell

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