Variant report

Variant	rs9841430
Chromosome Location	chr3:151015830-151015831
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:151013951..151016026-chr3:151038369..151040952,2	MCF-7	breast:
2	chr3:151011307..151016157-chr3:151019117..151025599,7	MCF-7	breast:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10513393	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13321176	0.84[EUR][1000 genomes]
rs1388625	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17204437	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17282940	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17282947	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17304673	0.87[EUR][1000 genomes]
rs28386791	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs28734805	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs28810515	0.83[EUR][1000 genomes]
rs28831788	0.83[EUR][1000 genomes]
rs55751359	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6780660	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6792089	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73157938	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73157954	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73157974	0.92[EUR][1000 genomes]
rs73157991	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9812617	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9814936	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9817216	0.86[EUR][1000 genomes]
rs9819885	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9821749	0.86[EUR][1000 genomes]
rs9821937	0.85[EUR][1000 genomes]
rs9831242	0.83[EUR][1000 genomes]
rs9834154	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9838990	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9840232	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9848789	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9853676	0.84[EUR][1000 genomes]
rs9854017	0.86[EUR][1000 genomes]
rs9856118	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9859854	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9867524	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9868643	0.81[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs9871229	0.83[EUR][1000 genomes]
rs9872645	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9875587	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9876268	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9876933	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9880395	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9881116	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460894	chr3:150770614-151095093	Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv592045	chr3:150770614-151095093	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv2754555	chr3:150968302-151054302	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150984400-151022400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr3:151002400-151018000	Weak transcription	NHLF	lung
3	chr3:151002600-151044000	Weak transcription	Primary hematopoietic stem cells	blood
4	chr3:151009600-151018200	Strong transcription	HMEC	breast
5	chr3:151009800-151016000	Weak transcription	Aorta	Aorta
6	chr3:151010200-151022200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr3:151010400-151019000	Strong transcription	NHEK	skin
8	chr3:151010600-151018800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr3:151010800-151018200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr3:151011200-151018800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr3:151011400-151021800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr3:151011800-151021600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr3:151012400-151021600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr3:151012800-151021600	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr3:151013200-151018000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr3:151014200-151016200	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr3:151014400-151017400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr3:151014400-151021800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr3:151014400-151022400	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr3:151014400-151022600	Weak transcription	Esophagus	oesophagus
21	chr3:151015200-151021800	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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