Variant report

Variant	rs73157938
Chromosome Location	chr3:150969293-150969294
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:150965721..150968051-chr3:150969254..150971148,2	K562	blood:

Variant related genes	Relation type
ENSG00000174944	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10513393	0.81[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs13321176	0.88[EUR][1000 genomes]
rs1388625	0.86[EUR][1000 genomes]
rs17204437	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs17282940	0.88[EUR][1000 genomes]
rs17282947	0.88[EUR][1000 genomes]
rs17304673	0.92[EUR][1000 genomes]
rs1920393	0.83[EUR][1000 genomes]
rs28386791	0.81[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs28734805	0.82[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs28810515	0.88[EUR][1000 genomes]
rs28831788	0.88[EUR][1000 genomes]
rs55751359	0.86[EUR][1000 genomes]
rs6780660	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6792089	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73157954	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73157974	0.86[EUR][1000 genomes]
rs73157991	0.86[EUR][1000 genomes]
rs9812617	0.81[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs9814936	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9817216	0.91[EUR][1000 genomes]
rs9819885	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9821749	0.91[EUR][1000 genomes]
rs9821937	0.90[EUR][1000 genomes]
rs9831242	0.88[EUR][1000 genomes]
rs9834154	0.88[EUR][1000 genomes]
rs9838990	0.81[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs9840232	0.81[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs9841430	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9848789	0.88[EUR][1000 genomes]
rs9853676	0.88[EUR][1000 genomes]
rs9854017	0.91[EUR][1000 genomes]
rs9856118	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs9859854	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9867524	0.88[EUR][1000 genomes]
rs9868643	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9871229	0.88[EUR][1000 genomes]
rs9872645	0.81[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs9875587	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9876268	0.81[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs9876933	0.88[EUR][1000 genomes]
rs9880395	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9881116	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460894	chr3:150770614-151095093	Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv592045	chr3:150770614-151095093	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv2754555	chr3:150968302-151054302	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150946200-150979400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:150946800-150983600	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr3:150952800-150978400	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr3:150953800-150983800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr3:150959400-150970600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr3:150959600-150977800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr3:150959600-150978200	Weak transcription	Primary hematopoietic stem cells	blood
8	chr3:150961200-150983600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr3:150965000-150980800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr3:150966400-150970600	Weak transcription	Rectal Smooth Muscle	rectum
11	chr3:150967000-150971400	Weak transcription	Stomach Smooth Muscle	stomach
12	chr3:150967000-150982600	Weak transcription	Gastric	stomach
13	chr3:150967200-150969400	Enhancers	Pancreatic Islets	Pancreatic Islet
14	chr3:150967200-150974200	Weak transcription	Fetal Lung	lung
15	chr3:150967600-150971000	Weak transcription	Fetal Stomach	stomach
16	chr3:150967800-150969400	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr3:150967800-150970600	Weak transcription	Colon Smooth Muscle	Colon
18	chr3:150968800-150972000	Weak transcription	Primary B cells from cord blood	blood
19	chr3:150969200-150969600	Enhancers	Stomach Mucosa	stomach
20	chr3:150969200-150969800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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