Variant report

Variant	rs13322794
Chromosome Location	chr3:150812615-150812616
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1017348	0.83[CEU][hapmap]
rs10513387	0.94[CEU][hapmap];0.87[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1221002	0.83[CEU][hapmap]
rs13092829	1.00[ASN][1000 genomes]
rs13321176	0.82[CEU][hapmap]
rs1456131	1.00[ASN][1000 genomes]
rs1549829	0.94[CEU][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1554120	0.94[CEU][hapmap];1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17290219	0.94[CEU][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17304673	1.00[ASN][1000 genomes]
rs1920393	1.00[ASN][1000 genomes]
rs1920397	0.83[CEU][hapmap]
rs2567325	0.88[CEU][hapmap]
rs35096827	1.00[ASN][1000 genomes]
rs4680064	1.00[ASN][1000 genomes]
rs4680068	1.00[ASN][1000 genomes]
rs55936523	1.00[AFR][1000 genomes]
rs6764540	1.00[ASN][1000 genomes]
rs6773020	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6792089	0.82[CEU][hapmap]
rs6806039	1.00[ASN][1000 genomes]
rs722133	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153836	1.00[ASN][1000 genomes]
rs73155751	1.00[ASN][1000 genomes]
rs73155773	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73155774	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73155776	1.00[AFR][1000 genomes]
rs7614811	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9814936	0.82[CEU][hapmap]
rs9817216	0.82[CEU][hapmap];1.00[ASN][1000 genomes]
rs9818251	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9821749	1.00[ASN][1000 genomes]
rs9821937	1.00[ASN][1000 genomes]
rs9831242	0.82[CEU][hapmap]
rs9836053	0.94[CEU][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9850762	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9854017	1.00[ASN][1000 genomes]
rs9854126	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9871229	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9871624	0.88[CEU][hapmap]
rs9881116	0.87[CEU][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915879	chr3:150607390-150860207	Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv829756	chr3:150692636-150889738	Weak transcription Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv460894	chr3:150770614-151095093	Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv592045	chr3:150770614-151095093	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	esv2757897	chr3:150791625-150957485	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	esv2759188	chr3:150791625-150957485	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv877648	chr3:150792444-150895145	Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150806000-150814400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr3:150806600-150819000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr3:150806800-150814000	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr3:150806800-150817800	Weak transcription	Brain Cingulate Gyrus	brain
5	chr3:150807800-150818400	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr3:150808000-150814200	Weak transcription	Fetal Muscle Leg	muscle
7	chr3:150809600-150813600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr3:150809800-150827400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr3:150810000-150814200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr3:150810200-150815600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr3:150811600-150821000	Weak transcription	Brain Substantia Nigra	brain
12	chr3:150811800-150814400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr3:150811800-150819000	Weak transcription	Brain Anterior Caudate	brain
14	chr3:150812000-150813800	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr3:150812000-150814200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr3:150812000-150814400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr3:150812000-150819000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr3:150812000-150819200	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr3:150812000-150824800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr3:150812200-150814400	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr3:150812200-150814400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr3:150812200-150819200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr3:150812200-150819200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr3:150812400-150813000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr3:150812400-150819600	Weak transcription	Primary hematopoietic stem cells	blood

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