Variant report

Variant	rs9850762
Chromosome Location	chr3:150871436-150871437
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:150865647..150868615-chr3:150871045..150873818,2	K562	blood:
2	chr3:150869768..150872209-chr3:150929310..150930894,2	K562	blood:
3	chr3:150479677..150481902-chr3:150869646..150871743,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000181788	Chromatin interaction
ENSG00000244265	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10513387	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13092829	1.00[ASN][1000 genomes]
rs13322794	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1456131	1.00[ASN][1000 genomes]
rs1549829	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1554120	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17290219	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17304673	1.00[ASN][1000 genomes]
rs1920393	1.00[ASN][1000 genomes]
rs2567325	0.80[EUR][1000 genomes]
rs4680068	1.00[ASN][1000 genomes]
rs55936523	1.00[AFR][1000 genomes]
rs6764540	1.00[ASN][1000 genomes]
rs6773020	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6806039	1.00[ASN][1000 genomes]
rs722133	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73155751	1.00[ASN][1000 genomes]
rs73155773	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73155774	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73155776	1.00[AFR][1000 genomes]
rs7614811	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9817216	1.00[ASN][1000 genomes]
rs9818251	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9821749	1.00[ASN][1000 genomes]
rs9821937	1.00[ASN][1000 genomes]
rs9836053	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9854017	1.00[ASN][1000 genomes]
rs9854126	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9871229	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9881116	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829756	chr3:150692636-150889738	Weak transcription Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv460894	chr3:150770614-151095093	Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv592045	chr3:150770614-151095093	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	esv2757897	chr3:150791625-150957485	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv2759188	chr3:150791625-150957485	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv877648	chr3:150792444-150895145	Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150827400-150873000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:150861400-150872600	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr3:150861800-150872600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr3:150862000-150872200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr3:150862800-150873000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr3:150862800-150873600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr3:150863200-150889000	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr3:150863800-150873000	Weak transcription	Fetal Brain Male	brain
9	chr3:150864200-150872800	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr3:150864200-150874400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr3:150864400-150871600	Weak transcription	Primary B cells from cord blood	blood
12	chr3:150864400-150873000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr3:150864600-150873800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr3:150864800-150872600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr3:150864800-150873200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr3:150865000-150886400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr3:150868800-150887400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr3:150870800-150873000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr3:150870800-150873600	Weak transcription	Primary hematopoietic stem cells	blood
20	chr3:150871000-150874200	Weak transcription	Primary neutrophils fromperipheralblood	blood
21	chr3:150871200-150873600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr3:150871200-150888400	Weak transcription	Fetal Intestine Small	intestine
23	chr3:150871400-150873000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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