Variant report

Variant	rs6773020
Chromosome Location	chr3:150834784-150834785
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:150834592..150835523-chr3:150863486..150864448,3	MCF-7	breast:
2	chr3:150833558..150835087-chr3:150837672..150839935,2	K562	blood:
3	chr3:150832672..150835087-chr3:150837619..150839935,2	K562	blood:
4	chr3:150831084..150833971-chr3:150834419..150836124,2	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10513387	0.87[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13092829	1.00[ASN][1000 genomes]
rs13322794	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1456131	1.00[ASN][1000 genomes]
rs1549829	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1554120	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17290219	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17304673	1.00[ASN][1000 genomes]
rs1920393	1.00[ASN][1000 genomes]
rs2567325	0.80[EUR][1000 genomes]
rs4680064	1.00[ASN][1000 genomes]
rs4680068	1.00[ASN][1000 genomes]
rs55936523	1.00[AFR][1000 genomes]
rs6764540	1.00[ASN][1000 genomes]
rs6806039	1.00[ASN][1000 genomes]
rs722133	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153836	1.00[ASN][1000 genomes]
rs73155751	1.00[ASN][1000 genomes]
rs73155773	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73155774	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73155776	1.00[AFR][1000 genomes]
rs7614811	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9817216	1.00[ASN][1000 genomes]
rs9818251	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9821749	1.00[ASN][1000 genomes]
rs9821937	1.00[ASN][1000 genomes]
rs9836053	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9850762	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9854017	1.00[ASN][1000 genomes]
rs9854126	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9871229	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9881116	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915879	chr3:150607390-150860207	Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv829756	chr3:150692636-150889738	Weak transcription Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv460894	chr3:150770614-151095093	Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv592045	chr3:150770614-151095093	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	esv2757897	chr3:150791625-150957485	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	esv2759188	chr3:150791625-150957485	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv877648	chr3:150792444-150895145	Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150819800-150847600	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr3:150820800-150840000	Weak transcription	Brain Cingulate Gyrus	brain
3	chr3:150823200-150843000	Weak transcription	Primary hematopoietic stem cells	blood
4	chr3:150826000-150855200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr3:150826400-150863600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr3:150826600-150846400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr3:150826600-150851800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr3:150826600-150855000	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr3:150826800-150841600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr3:150826800-150846600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr3:150827200-150847400	Weak transcription	Placenta	Placenta
12	chr3:150827400-150873000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr3:150827600-150855000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr3:150827800-150846400	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr3:150827800-150847400	Weak transcription	Fetal Intestine Large	intestine
16	chr3:150828800-150845600	Weak transcription	Fetal Muscle Leg	muscle
17	chr3:150830400-150863000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr3:150830800-150842800	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr3:150831000-150836800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr3:150831000-150840200	Weak transcription	Primary neutrophils fromperipheralblood	blood
21	chr3:150831000-150840400	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr3:150831200-150842800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr3:150831200-150863000	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr3:150831400-150842600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr3:150831600-150834800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr3:150833600-150852000	Weak transcription	Dnd41	blood
27	chr3:150834000-150834800	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr3:150834400-150844400	Weak transcription	Brain Angular Gyrus	brain

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