Variant report

Variant	rs6806039
Chromosome Location	chr3:150663450-150663451
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs13092829	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[GIH][hapmap];0.97[LWK][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13322794	1.00[ASN][1000 genomes]
rs1456131	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1549829	1.00[ASN][1000 genomes]
rs17290219	1.00[ASN][1000 genomes]
rs35096827	1.00[ASN][1000 genomes]
rs4680064	1.00[ASN][1000 genomes]
rs4680068	1.00[CEU][hapmap];1.00[GIH][hapmap];0.90[TSI][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6764540	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6773020	1.00[ASN][1000 genomes]
rs73153836	1.00[ASN][1000 genomes]
rs73155751	1.00[ASN][1000 genomes]
rs73155773	1.00[ASN][1000 genomes]
rs7614811	1.00[ASN][1000 genomes]
rs9818251	1.00[ASN][1000 genomes]
rs9850762	1.00[ASN][1000 genomes]
rs9854126	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915879	chr3:150607390-150860207	Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150661600-150663800	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr3:150662600-150663600	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr3:150662600-150663800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr3:150662600-150664200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr3:150662800-150663600	Enhancers	NH-A	brain
6	chr3:150662800-150664200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links