Variant report

Variant	rs9854126
Chromosome Location	chr3:150847047-150847048
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:150846331..150848398-chr3:150853442..150856842,3	MCF-7	breast:
2	chr3:150842359..150844988-chr3:150846770..150850038,3	K562	blood:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1017348	0.84[CEU][hapmap]
rs10513387	0.94[CEU][hapmap];0.87[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1221002	0.84[CEU][hapmap]
rs13092829	1.00[ASN][1000 genomes]
rs13321176	0.82[CEU][hapmap]
rs13322794	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1456131	1.00[ASN][1000 genomes]
rs1549829	0.94[CEU][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1554120	0.94[CEU][hapmap];1.00[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17290219	0.94[CEU][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17304673	1.00[ASN][1000 genomes]
rs1920393	1.00[ASN][1000 genomes]
rs1920397	0.84[CEU][hapmap]
rs2567325	0.89[CEU][hapmap];0.80[EUR][1000 genomes]
rs4680064	1.00[ASN][1000 genomes]
rs4680068	1.00[ASN][1000 genomes]
rs55936523	1.00[AFR][1000 genomes]
rs6764540	1.00[ASN][1000 genomes]
rs6773020	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6792089	0.83[CEU][hapmap]
rs6806039	1.00[ASN][1000 genomes]
rs722133	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73155751	1.00[ASN][1000 genomes]
rs73155773	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73155774	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73155776	1.00[AFR][1000 genomes]
rs7614811	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9814936	0.82[CEU][hapmap]
rs9817216	0.82[CEU][hapmap];1.00[ASN][1000 genomes]
rs9818251	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9819885	0.82[CEU][hapmap]
rs9821749	1.00[ASN][1000 genomes]
rs9821937	1.00[ASN][1000 genomes]
rs9831242	0.82[CEU][hapmap]
rs9836053	0.94[CEU][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9850762	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9854017	1.00[ASN][1000 genomes]
rs9871229	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9871624	0.89[CEU][hapmap]
rs9872645	0.82[CEU][hapmap]
rs9881116	0.88[CEU][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915879	chr3:150607390-150860207	Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv829756	chr3:150692636-150889738	Weak transcription Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv460894	chr3:150770614-151095093	Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv592045	chr3:150770614-151095093	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	esv2757897	chr3:150791625-150957485	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	esv2759188	chr3:150791625-150957485	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv877648	chr3:150792444-150895145	Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150819800-150847600	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr3:150826000-150855200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr3:150826400-150863600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr3:150826600-150851800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr3:150826600-150855000	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr3:150827200-150847400	Weak transcription	Placenta	Placenta
7	chr3:150827400-150873000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr3:150827600-150855000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr3:150827800-150847400	Weak transcription	Fetal Intestine Large	intestine
10	chr3:150830400-150863000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr3:150831200-150863000	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr3:150833600-150852000	Weak transcription	Dnd41	blood
13	chr3:150840600-150853200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr3:150844000-150851800	Weak transcription	Fetal Thymus	thymus
15	chr3:150844200-150847600	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr3:150844600-150847600	Weak transcription	Fetal Brain Female	brain
17	chr3:150844600-150853400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr3:150844800-150863600	Weak transcription	Brain Angular Gyrus	brain
19	chr3:150844800-150863600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr3:150845000-150847200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr3:150845600-150848400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
22	chr3:150845600-150851400	Strong transcription	Primary neutrophils fromperipheralblood	blood
23	chr3:150846200-150862400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr3:150846400-150847600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr3:150846400-150848000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr3:150846400-150850800	Weak transcription	Primary hematopoietic stem cells	blood
27	chr3:150846400-150851000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
28	chr3:150846400-150852000	Weak transcription	Fetal Intestine Small	intestine
29	chr3:150846400-150863600	Weak transcription	Brain Anterior Caudate	brain
30	chr3:150846600-150847600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr3:150846600-150848800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr3:150846600-150851200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr3:150846600-150853400	Weak transcription	Fetal Muscle Leg	muscle
34	chr3:150846800-150848600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr3:150846800-150862600	Weak transcription	HUES48 Cell Line	embryonic stem cell
36	chr3:150847000-150855200	Weak transcription	HUES64 Cell Line	embryonic stem cell

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