Variant report

Variant	rs2567325
Chromosome Location	chr3:150842234-150842235
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:150839387..150842321-chr3:150844225..150846758,2	K562	blood:
2	chr3:150827811..150829869-chr3:150841220..150843830,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1017348	0.94[CEU][hapmap];0.88[EUR][1000 genomes]
rs10513387	0.83[CEU][hapmap]
rs1220998	0.97[ASN][1000 genomes]
rs1221002	0.94[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.85[YRI][hapmap];0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1221003	0.81[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap];0.81[AMR][1000 genomes]
rs1221004	1.00[CHB][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs1231519	0.80[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.85[YRI][hapmap]
rs1231520	0.94[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs13322794	0.88[CEU][hapmap]
rs1549829	0.83[CEU][hapmap]
rs1554120	0.83[CEU][hapmap]
rs17290219	0.83[CEU][hapmap]
rs1920397	0.94[CEU][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2141630	0.81[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2700470	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4680158	0.85[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57504644	0.96[ASN][1000 genomes]
rs6440722	0.81[AMR][1000 genomes]
rs6773020	0.80[EUR][1000 genomes]
rs9818251	0.92[CEU][hapmap]
rs9836053	0.83[CEU][hapmap]
rs9850762	0.80[EUR][1000 genomes]
rs9854126	0.89[CEU][hapmap];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915879	chr3:150607390-150860207	Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv829756	chr3:150692636-150889738	Weak transcription Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv460894	chr3:150770614-151095093	Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv592045	chr3:150770614-151095093	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	esv2757897	chr3:150791625-150957485	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	esv2759188	chr3:150791625-150957485	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv877648	chr3:150792444-150895145	Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150819800-150847600	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr3:150823200-150843000	Weak transcription	Primary hematopoietic stem cells	blood
3	chr3:150826000-150855200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr3:150826400-150863600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr3:150826600-150846400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr3:150826600-150851800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr3:150826600-150855000	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr3:150826800-150846600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr3:150827200-150847400	Weak transcription	Placenta	Placenta
10	chr3:150827400-150873000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr3:150827600-150855000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr3:150827800-150846400	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr3:150827800-150847400	Weak transcription	Fetal Intestine Large	intestine
14	chr3:150828800-150845600	Weak transcription	Fetal Muscle Leg	muscle
15	chr3:150830400-150863000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr3:150830800-150842800	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr3:150831200-150842800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr3:150831200-150863000	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr3:150831400-150842600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr3:150833600-150852000	Weak transcription	Dnd41	blood
21	chr3:150834400-150844400	Weak transcription	Brain Angular Gyrus	brain
22	chr3:150837400-150845800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr3:150839600-150846000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr3:150839800-150844000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr3:150840200-150844000	Strong transcription	Primary neutrophils fromperipheralblood	blood
26	chr3:150840400-150843800	Strong transcription	HUES64 Cell Line	embryonic stem cell
27	chr3:150840600-150853200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr3:150840800-150843000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr3:150841600-150842600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr3:150841800-150842400	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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