Variant report

Variant	rs9882875
Chromosome Location	chr3:133984854-133984855
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:133977645..133980911-chr3:133983363..133985733,3	K562	blood:

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs11711122	0.82[EUR][1000 genomes]
rs13059653	0.82[EUR][1000 genomes]
rs13065669	0.82[EUR][1000 genomes]
rs13073076	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13074310	0.82[EUR][1000 genomes]
rs13080318	0.85[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs13080570	0.82[EUR][1000 genomes]
rs13096460	0.84[EUR][1000 genomes]
rs28450327	0.82[EUR][1000 genomes]
rs28484700	0.82[EUR][1000 genomes]
rs28622917	0.84[EUR][1000 genomes]
rs28667241	0.82[EUR][1000 genomes]
rs35241315	0.81[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs35338993	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35397189	0.85[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs35702871	0.82[EUR][1000 genomes]
rs35750568	0.82[EUR][1000 genomes]
rs4077107	0.82[EUR][1000 genomes]
rs4241374	0.82[EUR][1000 genomes]
rs4280634	0.82[EUR][1000 genomes]
rs4345064	0.82[EUR][1000 genomes]
rs4355279	0.82[EUR][1000 genomes]
rs4413311	0.82[EUR][1000 genomes]
rs4419375	0.82[EUR][1000 genomes]
rs4450812	0.82[EUR][1000 genomes]
rs4546144	0.82[EUR][1000 genomes]
rs4552343	0.82[EUR][1000 genomes]
rs4640559	0.82[EUR][1000 genomes]
rs4682671	0.87[ASN][1000 genomes]
rs4854614	0.82[EUR][1000 genomes]
rs4854615	0.82[EUR][1000 genomes]
rs4854817	0.82[EUR][1000 genomes]
rs4854818	0.82[EUR][1000 genomes]
rs4854820	0.82[EUR][1000 genomes]
rs4854825	0.82[EUR][1000 genomes]
rs6439460	0.82[EUR][1000 genomes]
rs6439461	0.82[EUR][1000 genomes]
rs6776592	0.84[EUR][1000 genomes]
rs6777817	0.82[EUR][1000 genomes]
rs6796570	0.82[EUR][1000 genomes]
rs6802495	0.82[EUR][1000 genomes]
rs7611109	0.82[EUR][1000 genomes]
rs7613782	0.82[EUR][1000 genomes]
rs7626852	0.82[EUR][1000 genomes]
rs7653175	0.82[EUR][1000 genomes]
rs9790149	0.82[EUR][1000 genomes]
rs9827105	0.82[EUR][1000 genomes]
rs9831998	0.82[EUR][1000 genomes]
rs9842531	0.82[EUR][1000 genomes]
rs9847033	0.82[EUR][1000 genomes]
rs9853047	0.82[EUR][1000 genomes]
rs9857486	0.82[EUR][1000 genomes]
rs9857977	0.82[EUR][1000 genomes]
rs9865639	0.82[EUR][1000 genomes]
rs9867748	0.82[EUR][1000 genomes]
rs9869195	0.82[EUR][1000 genomes]
rs9869613	0.82[EUR][1000 genomes]
rs9870910	0.82[EUR][1000 genomes]
rs9871137	0.82[EUR][1000 genomes]
rs9877506	0.82[EUR][1000 genomes]
rs9878348	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3522171	chr3:133889405-134156571	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	esv3522172	chr3:133889405-134156571	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133980400-133985400	Weak transcription	HepG2	liver
2	chr3:133981000-133987000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr3:133984800-133985800	Enhancers	Duodenum Mucosa	Duodenum

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