Variant report

Variant	rs35241315
Chromosome Location	chr3:133931851-133931852
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:133931476..133932405-chr3:134018510..134019037,3	MCF-7	breast:
2	chr3:133648907..133649746-chr3:133931510..133932324,3	MCF-7	breast:
3	chr3:133929438..133933511-chr3:133934266..133936727,4	K562	blood:
4	chr3:133648937..133649733-chr3:133931456..133932065,2	K562	blood:
5	chr3:133931051..133933200-chr3:134201381..134203725,2	MCF-7	breast:
6	chr3:133650886..133653497-chr3:133930540..133932971,2	MCF-7	breast:
7	chr3:133931774..133932354-chr3:134167857..134168700,2	MCF-7	breast:
8	chr3:133930775..133933152-chr3:133968044..133970596,3	MCF-7	breast:
9	chr3:133931480..133932031-chr3:134198128..134199259,3	MCF-7	breast:
10	chr3:133931483..133932441-chr3:134019083..134019910,2	K562	blood:
11	chr3:133929711..133931992-chr3:134027528..134029983,2	MCF-7	breast:
12	chr3:133924472..133926477-chr3:133931064..133932575,2	K562	blood:
13	chr3:133916838..133918592-chr3:133930697..133932431,2	MCF-7	breast:
14	chr3:133930920..133932595-chr3:134018162..134020016,12	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000129055	Chromatin interaction
ENSG00000163785	Chromatin interaction

Extended variants
information (count: 86 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs11711122	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11716232	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13059653	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13065669	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13073076	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs13074310	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13075472	0.84[EUR][1000 genomes]
rs13080318	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13080570	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13096460	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28450327	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28484700	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28622917	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28667241	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28785783	0.86[EUR][1000 genomes]
rs28852473	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34678092	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35293292	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35338993	0.95[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35397189	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35702871	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35750568	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4077107	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4241373	0.84[EUR][1000 genomes]
rs4241374	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4280634	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4305420	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4342102	0.82[EUR][1000 genomes]
rs4345064	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4355279	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4380411	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4413311	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4419375	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4450812	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4507252	0.84[EUR][1000 genomes]
rs4507253	0.84[EUR][1000 genomes]
rs4546144	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4547696	0.82[EUR][1000 genomes]
rs4552343	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4558752	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4640559	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4854611	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4854614	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4854615	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4854811	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4854812	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4854817	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4854818	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4854820	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4854825	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62269301	0.82[EUR][1000 genomes]
rs6439460	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6439461	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6776592	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6777817	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6796570	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6802495	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7611109	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7613782	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7626852	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7632489	0.84[EUR][1000 genomes]
rs7632556	0.84[EUR][1000 genomes]
rs7632691	0.84[EUR][1000 genomes]
rs7653175	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9289460	0.82[EUR][1000 genomes]
rs9790149	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9827105	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9831998	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9842531	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9843541	0.82[EUR][1000 genomes]
rs9847033	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9850689	0.84[EUR][1000 genomes]
rs9853047	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9857486	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9857977	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9865639	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9867748	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9869195	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9869613	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9870910	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9871137	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9877506	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9878348	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9882875	0.81[AFR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3522171	chr3:133889405-134156571	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	esv3522172	chr3:133889405-134156571	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133874600-133933600	Weak transcription	Colonic Mucosa	Colon
2	chr3:133877600-133935200	Weak transcription	Psoas Muscle	Psoas
3	chr3:133877800-133950200	Weak transcription	Small Intestine	intestine
4	chr3:133894800-133935200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr3:133894800-133946800	Weak transcription	Pancreas	Pancrea
6	chr3:133895000-133950000	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr3:133895000-133950200	Weak transcription	Gastric	stomach
8	chr3:133895600-133942800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr3:133909200-133943000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr3:133919000-133950600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr3:133919400-133943000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr3:133919800-133940200	Weak transcription	Esophagus	oesophagus
13	chr3:133920000-133940200	Weak transcription	Fetal Intestine Small	intestine
14	chr3:133920200-133934000	Weak transcription	Brain Hippocampus Middle	brain
15	chr3:133920200-133938200	Weak transcription	Fetal Brain Male	brain
16	chr3:133920400-133938600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr3:133920600-133932000	Weak transcription	Brain Anterior Caudate	brain
18	chr3:133920600-133938400	Weak transcription	HSMMtube	muscle
19	chr3:133920600-133940600	Weak transcription	A549	lung
20	chr3:133920800-133932000	Weak transcription	Ovary	ovary
21	chr3:133920800-133940600	Weak transcription	Thymus	Thymus
22	chr3:133920800-133950200	Weak transcription	Aorta	Aorta
23	chr3:133920800-133950200	Weak transcription	Spleen	Spleen
24	chr3:133920800-133950600	Weak transcription	Hela-S3	cervix
25	chr3:133921400-133934600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr3:133921600-133932000	Weak transcription	Colon Smooth Muscle	Colon
27	chr3:133921600-133937200	Weak transcription	Fetal Stomach	stomach
28	chr3:133921600-133941800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr3:133921800-133943000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr3:133923800-133934200	Strong transcription	Primary B cells from cord blood	blood
31	chr3:133924600-133941800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr3:133927000-133932400	Enhancers	Fetal Heart	heart
33	chr3:133928000-133932000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
34	chr3:133928600-133949400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
35	chr3:133930000-133933400	Enhancers	HMEC	breast
36	chr3:133930000-133934200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr3:133930000-133935800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr3:133930000-133942400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
39	chr3:133930000-133950000	Weak transcription	NHDF-Ad	bronchial
40	chr3:133930000-133950400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
41	chr3:133930000-133954600	Weak transcription	Brain Cingulate Gyrus	brain
42	chr3:133930200-133932000	Weak transcription	Brain Substantia Nigra	brain
43	chr3:133930200-133932000	Weak transcription	NHLF	lung
44	chr3:133930200-133932200	Weak transcription	Right Ventricle	heart
45	chr3:133930200-133932800	Weak transcription	Lung	lung
46	chr3:133930200-133933200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr3:133930200-133933200	Weak transcription	GM12878-XiMat	blood
48	chr3:133930200-133933400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr3:133930200-133934400	Weak transcription	Fetal Brain Female	brain
50	chr3:133930200-133935000	Weak transcription	Fetal Intestine Large	intestine

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