Variant report

Variant	rs62269301
Chromosome Location	chr3:133804853-133804854
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 92 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:92)

rs_ID	r²[population]
rs11711122	0.88[EUR][1000 genomes]
rs11716232	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13059653	0.88[EUR][1000 genomes]
rs13065669	0.88[EUR][1000 genomes]
rs13067053	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13074310	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13075472	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13080318	0.86[EUR][1000 genomes]
rs13080570	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13096460	0.86[EUR][1000 genomes]
rs28450327	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs28484700	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs28622917	0.86[EUR][1000 genomes]
rs28667241	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs28726214	0.95[EUR][1000 genomes]
rs28785783	0.81[EUR][1000 genomes]
rs28852473	0.88[EUR][1000 genomes]
rs34678092	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35241315	0.82[EUR][1000 genomes]
rs35293292	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35397189	0.82[EUR][1000 genomes]
rs35702871	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs35750568	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4077107	0.88[EUR][1000 genomes]
rs4241372	0.90[ASN][1000 genomes]
rs4241373	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4241374	0.88[EUR][1000 genomes]
rs4280634	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4305420	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4323003	0.88[EUR][1000 genomes]
rs4342102	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4345064	0.88[EUR][1000 genomes]
rs4355279	0.88[EUR][1000 genomes]
rs4413311	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4419375	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4426678	0.90[ASN][1000 genomes]
rs4450812	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4507252	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4507253	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4518125	0.90[ASN][1000 genomes]
rs4535222	0.90[ASN][1000 genomes]
rs4546144	0.88[EUR][1000 genomes]
rs4547696	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4552343	0.88[EUR][1000 genomes]
rs4558752	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4640559	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4854610	0.90[ASN][1000 genomes]
rs4854611	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4854614	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4854615	0.88[EUR][1000 genomes]
rs4854809	0.88[ASN][1000 genomes]
rs4854811	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4854812	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4854817	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4854818	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4854820	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4854825	0.88[EUR][1000 genomes]
rs6439460	0.88[EUR][1000 genomes]
rs6439461	0.88[EUR][1000 genomes]
rs6776592	0.86[EUR][1000 genomes]
rs6777817	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6796570	0.88[EUR][1000 genomes]
rs6802495	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7611109	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7613782	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7626852	0.88[EUR][1000 genomes]
rs7632489	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7632556	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7632691	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7653175	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9289460	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9790149	0.88[EUR][1000 genomes]
rs9818626	0.90[ASN][1000 genomes]
rs9827105	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9831998	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9832817	0.88[EUR][1000 genomes]
rs9842531	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9843541	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9847033	0.88[EUR][1000 genomes]
rs9850689	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9853047	0.88[EUR][1000 genomes]
rs9857486	0.88[EUR][1000 genomes]
rs9857977	0.88[EUR][1000 genomes]
rs9865639	0.88[EUR][1000 genomes]
rs9867748	0.88[EUR][1000 genomes]
rs9869195	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9869613	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9870910	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9871137	0.88[EUR][1000 genomes]
rs9877506	0.88[EUR][1000 genomes]
rs9878348	0.88[EUR][1000 genomes]
rs9884048	0.90[ASN][1000 genomes]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133800400-133805200	Weak transcription	Esophagus	oesophagus
2	chr3:133801000-133806800	Enhancers	Placenta	Placenta
3	chr3:133802800-133812000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr3:133803800-133805000	Weak transcription	HMEC	breast
5	chr3:133804400-133806800	Enhancers	Stomach Mucosa	stomach
6	chr3:133804600-133805600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr3:133804600-133805800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr3:133804600-133806000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr3:133804800-133805200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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