Variant report

Variant	rs4342102
Chromosome Location	chr3:133802216-133802217
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:133721408..133723221-chr3:133800832..133803443,2	MCF-7	breast:

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs11711122	0.88[EUR][1000 genomes]
rs11716232	0.93[EUR][1000 genomes]
rs13059653	0.88[EUR][1000 genomes]
rs13065669	0.88[EUR][1000 genomes]
rs13067053	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13074310	0.88[EUR][1000 genomes]
rs13075472	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13080318	0.86[EUR][1000 genomes]
rs13080570	0.88[EUR][1000 genomes]
rs13096460	0.86[EUR][1000 genomes]
rs28450327	0.88[EUR][1000 genomes]
rs28484700	0.88[EUR][1000 genomes]
rs28622917	0.86[EUR][1000 genomes]
rs28667241	0.88[EUR][1000 genomes]
rs28726214	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs28785783	0.81[EUR][1000 genomes]
rs28852473	0.88[EUR][1000 genomes]
rs34678092	0.86[EUR][1000 genomes]
rs35241315	0.82[EUR][1000 genomes]
rs35293292	0.86[EUR][1000 genomes]
rs35397189	0.82[EUR][1000 genomes]
rs35702871	0.88[EUR][1000 genomes]
rs35750568	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4077107	0.88[EUR][1000 genomes]
rs4241373	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4241374	0.88[EUR][1000 genomes]
rs4280634	0.88[EUR][1000 genomes]
rs4305420	0.86[EUR][1000 genomes]
rs4323003	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4345064	0.88[EUR][1000 genomes]
rs4355279	0.88[EUR][1000 genomes]
rs4413311	0.88[EUR][1000 genomes]
rs4419375	0.88[EUR][1000 genomes]
rs4450812	0.88[EUR][1000 genomes]
rs4507252	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4507253	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4546144	0.88[EUR][1000 genomes]
rs4547696	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4552343	0.88[EUR][1000 genomes]
rs4558752	0.83[EUR][1000 genomes]
rs4640559	0.88[EUR][1000 genomes]
rs4854611	0.91[EUR][1000 genomes]
rs4854614	0.88[EUR][1000 genomes]
rs4854615	0.88[EUR][1000 genomes]
rs4854811	0.91[EUR][1000 genomes]
rs4854812	0.91[EUR][1000 genomes]
rs4854817	0.88[EUR][1000 genomes]
rs4854818	0.88[EUR][1000 genomes]
rs4854820	0.88[EUR][1000 genomes]
rs4854825	0.88[EUR][1000 genomes]
rs62269301	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6439460	0.88[EUR][1000 genomes]
rs6439461	0.88[EUR][1000 genomes]
rs6776592	0.86[EUR][1000 genomes]
rs6777817	0.88[EUR][1000 genomes]
rs6796570	0.88[EUR][1000 genomes]
rs6802495	0.88[EUR][1000 genomes]
rs7611109	0.88[EUR][1000 genomes]
rs7613782	0.88[EUR][1000 genomes]
rs7626852	0.88[EUR][1000 genomes]
rs7632489	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7632556	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7632691	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7653175	0.88[EUR][1000 genomes]
rs9289460	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9790149	0.88[EUR][1000 genomes]
rs9827105	0.88[EUR][1000 genomes]
rs9831998	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9832817	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9842531	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9843541	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9847033	0.88[EUR][1000 genomes]
rs9850689	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9853047	0.88[EUR][1000 genomes]
rs9857486	0.88[EUR][1000 genomes]
rs9857977	0.88[EUR][1000 genomes]
rs9865639	0.88[EUR][1000 genomes]
rs9867748	0.88[EUR][1000 genomes]
rs9869195	0.88[EUR][1000 genomes]
rs9869613	0.88[EUR][1000 genomes]
rs9870910	0.88[EUR][1000 genomes]
rs9871137	0.88[EUR][1000 genomes]
rs9877506	0.88[EUR][1000 genomes]
rs9878348	0.88[EUR][1000 genomes]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133792200-133802600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:133800400-133802600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:133800400-133805200	Weak transcription	Esophagus	oesophagus
4	chr3:133801000-133806800	Enhancers	Placenta	Placenta
5	chr3:133801400-133803400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr3:133801800-133802600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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