Variant report

Variant	rs4546144
Chromosome Location	chr3:133842310-133842311
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 94 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:93)

rs_ID	r²[population]
rs11711122	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11716232	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13059653	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13065669	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13067053	0.84[EUR][1000 genomes]
rs13073076	0.81[ASN][1000 genomes]
rs13074310	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13075472	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13080318	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13080570	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13096460	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28450327	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28484700	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28622917	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28667241	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28726214	0.84[EUR][1000 genomes]
rs28785783	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28852473	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34678092	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35241315	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35293292	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35338993	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35397189	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35702871	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35750568	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4077107	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4241372	0.80[ASN][1000 genomes]
rs4241373	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4241374	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4280634	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4305420	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4342102	0.88[EUR][1000 genomes]
rs4345064	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4355279	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4380411	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4413311	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4419375	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4426678	0.80[ASN][1000 genomes]
rs4450812	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4507252	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4507253	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4518125	0.80[ASN][1000 genomes]
rs4535222	0.80[ASN][1000 genomes]
rs4547696	0.88[EUR][1000 genomes]
rs4552343	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4558752	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4640559	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4854611	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4854614	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4854615	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4854809	0.81[ASN][1000 genomes]
rs4854811	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4854812	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4854817	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4854818	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4854820	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4854825	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62269301	0.88[EUR][1000 genomes]
rs6439460	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6439461	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6776592	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6777817	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6796570	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6802495	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7611109	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7613782	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7626852	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7632489	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7632556	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7632691	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7653175	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9289460	0.88[EUR][1000 genomes]
rs9790149	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9818626	0.80[ASN][1000 genomes]
rs9827105	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9831998	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9842531	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9843541	0.88[EUR][1000 genomes]
rs9847033	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9850689	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9853047	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9857486	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9857977	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9865639	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9867748	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9869195	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9869613	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9870910	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9871137	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9877506	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9878348	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9882875	0.82[EUR][1000 genomes]
rs9884048	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv965344	chr3:133805086-133862489	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133827600-133862800	Weak transcription	Left Ventricle	heart
2	chr3:133838800-133847800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:133840000-133842400	Weak transcription	Stomach Smooth Muscle	stomach
4	chr3:133840600-133862800	Weak transcription	Right Ventricle	heart
5	chr3:133840800-133843200	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr3:133840800-133862800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr3:133841400-133842600	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr3:133841600-133842600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr3:133841600-133842800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr3:133841600-133843000	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr3:133841600-133843000	ZNF genes & repeats	Aorta	Aorta
12	chr3:133841600-133843200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr3:133841600-133843200	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr3:133841600-133843200	ZNF genes & repeats	Pancreas	Pancrea
15	chr3:133841800-133843000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
16	chr3:133841800-133843200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr3:133841800-133843400	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr3:133842000-133842600	ZNF genes & repeats	Adipose Nuclei	Adipose
19	chr3:133842000-133842800	ZNF genes & repeats	Fetal Brain Female	brain
20	chr3:133842000-133843000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr3:133842000-133843000	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr3:133842000-133843000	ZNF genes & repeats	Gastric	stomach
23	chr3:133842000-133847600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr3:133842000-133848000	Weak transcription	Ovary	ovary
25	chr3:133842000-133872600	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr3:133842200-133843000	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr3:133842200-133843200	ZNF genes & repeats	Placenta	Placenta

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