Variant report

Variant	rs35397189
Chromosome Location	chr3:133947672-133947673
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:133946454..133948337-chr3:133962958..133965127,2	K562	blood:
2	chr3:133944783..133948371-chr3:133966859..133970874,4	MCF-7	breast:
3	chr3:133945469..133947750-chr3:133969654..133972532,2	K562	blood:

Variant related genes	Relation type
ENSG00000163785	Chromatin interaction

Extended variants
information (count: 86 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs11711122	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11716232	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13059653	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13065669	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13073076	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs13074310	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13075472	0.84[EUR][1000 genomes]
rs13080318	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13080570	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13096460	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28450327	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28484700	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28622917	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28667241	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28785783	0.86[EUR][1000 genomes]
rs28852473	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34678092	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35241315	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35293292	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35338993	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35702871	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35750568	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4077107	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4241373	0.84[EUR][1000 genomes]
rs4241374	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4280634	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4305420	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4342102	0.82[EUR][1000 genomes]
rs4345064	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4355279	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4380411	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4413311	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4419375	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4450812	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4507252	0.84[EUR][1000 genomes]
rs4507253	0.84[EUR][1000 genomes]
rs4546144	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4547696	0.82[EUR][1000 genomes]
rs4552343	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4558752	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4640559	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4854611	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4854614	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4854615	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4854811	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4854812	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4854817	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4854818	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4854820	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4854825	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62269301	0.82[EUR][1000 genomes]
rs6439460	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6439461	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6776592	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6777817	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6796570	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6802495	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7611109	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7613782	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7626852	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7632489	0.84[EUR][1000 genomes]
rs7632556	0.84[EUR][1000 genomes]
rs7632691	0.84[EUR][1000 genomes]
rs7653175	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9289460	0.82[EUR][1000 genomes]
rs9790149	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9827105	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9831998	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9842531	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9843541	0.82[EUR][1000 genomes]
rs9847033	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9850689	0.84[EUR][1000 genomes]
rs9853047	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9857486	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9857977	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9865639	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9867748	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9869195	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9869613	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9870910	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9871137	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9877506	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9878348	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9882875	0.85[AFR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3522171	chr3:133889405-134156571	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	esv3522172	chr3:133889405-134156571	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133877800-133950200	Weak transcription	Small Intestine	intestine
2	chr3:133895000-133950000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr3:133895000-133950200	Weak transcription	Gastric	stomach
4	chr3:133919000-133950600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr3:133920800-133950200	Weak transcription	Aorta	Aorta
6	chr3:133920800-133950200	Weak transcription	Spleen	Spleen
7	chr3:133920800-133950600	Weak transcription	Hela-S3	cervix
8	chr3:133928600-133949400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr3:133930000-133950000	Weak transcription	NHDF-Ad	bronchial
10	chr3:133930000-133950400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr3:133930000-133954600	Weak transcription	Brain Cingulate Gyrus	brain
12	chr3:133930200-133950000	Weak transcription	HSMM	muscle
13	chr3:133930200-133950200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr3:133930200-133950600	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr3:133930200-133955000	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr3:133930200-133968000	Weak transcription	Fetal Kidney	kidney
17	chr3:133930400-133950200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr3:133930600-133957800	Weak transcription	Primary hematopoietic stem cells	blood
19	chr3:133931400-133950200	Weak transcription	Dnd41	blood
20	chr3:133932400-133951000	Weak transcription	NHLF	lung
21	chr3:133933600-133950000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr3:133934600-133950400	Weak transcription	Brain Hippocampus Middle	brain
23	chr3:133935400-133954600	Weak transcription	HUVEC	blood vessel
24	chr3:133938400-133950000	Weak transcription	Primary T cells from cord blood	blood
25	chr3:133938400-133950000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr3:133938800-133955200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
27	chr3:133939000-133949800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr3:133939000-133950000	Weak transcription	HSMMtube	muscle
29	chr3:133941000-133950200	Weak transcription	Primary B cells from peripheral blood	blood
30	chr3:133941000-133954600	Weak transcription	Duodenum Mucosa	Duodenum
31	chr3:133941000-133954800	Weak transcription	Fetal Intestine Large	intestine
32	chr3:133941000-133961600	Weak transcription	Esophagus	oesophagus
33	chr3:133941200-133950200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr3:133941200-133950200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr3:133941200-133950400	Weak transcription	Placenta	Placenta
36	chr3:133941400-133950000	Weak transcription	Thymus	Thymus
37	chr3:133941400-133950800	Weak transcription	HepG2	liver
38	chr3:133941400-133957200	Weak transcription	Fetal Stomach	stomach
39	chr3:133941400-133967400	Weak transcription	Fetal Muscle Leg	muscle
40	chr3:133942000-133951000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr3:133942000-133952600	Weak transcription	Brain Angular Gyrus	brain
42	chr3:133943000-133948200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
43	chr3:133943000-133950800	Weak transcription	Cortex derived primary cultured neurospheres	brain
44	chr3:133943200-133954600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr3:133943400-133947800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr3:133943400-133948200	Weak transcription	HUES64 Cell Line	embryonic stem cell
47	chr3:133943400-133948200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
48	chr3:133943400-133950200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
49	chr3:133943400-133950200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
50	chr3:133943400-133950200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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