Variant report

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:60161818..60164502-chr17:60171799..60173649,2	MCF-7	breast:
2	chr17:60163163..60166092-chr17:60169784..60172522,2	MCF-7	breast:
3	chr17:60161258..60163648-chr17:60164199..60167078,2	MCF-7	breast:
4	chr17:60005240..60007061-chr17:60161631..60164452,2	MCF-7	breast:
5	chr17:60141696..60143568-chr17:60162916..60166435,4	MCF-7	breast:
6	chr17:60162660..60165107-chr17:60181643..60183994,2	K562	blood:
7	chr17:60140089..60144135-chr17:60163778..60167736,3	K562	blood:
8	chr17:60163070..60164734-chr17:60167356..60169159,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000108506	Chromatin interaction
ENSG00000108510	Chromatin interaction

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12103770	1.00[EUR][1000 genomes]
rs16945866	1.00[EUR][1000 genomes]
rs28670441	1.00[EUR][1000 genomes]
rs4968411	1.00[EUR][1000 genomes]
rs4968482	1.00[EUR][1000 genomes]
rs7212697	1.00[EUR][1000 genomes]
rs73327634	1.00[EUR][1000 genomes]
rs73338410	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73338442	1.00[EUR][1000 genomes]
rs8074607	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9890405	1.00[EUR][1000 genomes]
rs9894102	1.00[EUR][1000 genomes]
rs9897373	1.00[EUR][1000 genomes]
rs9897713	1.00[EUR][1000 genomes]
rs9899173	1.00[EUR][1000 genomes]
rs9900110	1.00[EUR][1000 genomes]
rs9905100	1.00[EUR][1000 genomes]
rs9907962	1.00[EUR][1000 genomes]
rs9913415	1.00[EUR][1000 genomes]
rs9916871	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062816	chr17:60074670-60470465	Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
2	esv2753884	chr17:60077852-60190630	Strong transcription Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	esv2755037	chr17:60086508-60386211	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
4	esv3415630	chr17:60124819-60401635	Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:60155800-60167600	Weak transcription	Pancreas	Pancrea
2	chr17:60162000-60167400	Enhancers	HepG2	liver
3	chr17:60163200-60164800	Enhancers	Osteobl	bone
4	chr17:60163600-60166800	Weak transcription	Duodenum Mucosa	Duodenum
5	chr17:60163600-60167000	Weak transcription	Fetal Intestine Small	intestine
6	chr17:60163600-60169200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr17:60163800-60166400	Weak transcription	Stomach Mucosa	stomach
8	chr17:60164200-60166400	Weak transcription	Fetal Brain Male	brain
9	chr17:60164400-60165400	Weak transcription	Liver	Liver

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