Variant report

Variant	rs9905100
Chromosome Location	chr17:60149099-60149100
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12103770	1.00[EUR][1000 genomes]
rs16945866	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28670441	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4968411	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4968482	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7212697	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73327634	1.00[EUR][1000 genomes]
rs73338410	1.00[EUR][1000 genomes]
rs73338442	1.00[EUR][1000 genomes]
rs73991963	1.00[AMR][1000 genomes]
rs8074607	1.00[EUR][1000 genomes]
rs9890405	1.00[EUR][1000 genomes]
rs9894102	1.00[EUR][1000 genomes]
rs9897373	1.00[EUR][1000 genomes]
rs9897713	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9898702	1.00[EUR][1000 genomes]
rs9899173	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9900110	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9907962	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9910074	1.00[AMR][1000 genomes]
rs9913415	1.00[EUR][1000 genomes]
rs9916871	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062816	chr17:60074670-60470465	Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
2	esv2753884	chr17:60077852-60190630	Strong transcription Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	esv2755037	chr17:60086508-60386211	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
4	esv3415630	chr17:60124819-60401635	Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:60144000-60152600	Weak transcription	GM12878-XiMat	blood
2	chr17:60145400-60152400	Weak transcription	Fetal Intestine Small	intestine
3	chr17:60145400-60152800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr17:60145600-60149600	Weak transcription	HepG2	liver
5	chr17:60147400-60153600	Weak transcription	Liver	Liver
6	chr17:60147800-60152600	Weak transcription	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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