Variant report

Variant	rs9899173
Chromosome Location	chr17:60187371-60187372
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:19)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:19 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:59713323..59713928-chr17:60186917..60187472,2	K562	blood:
2	chr17:59713215..59713887-chr17:60186829..60187380,2	MCF-7	breast:
3	chr17:60093422..60097278-chr17:60186745..60191637,29	MCF-7	breast:
4	chr17:60186965..60191776-chr20:54152966..54157696,6	MCF-7	breast:
5	chr17:60007193..60009605-chr17:60184823..60187423,2	MCF-7	breast:
6	chr17:60186973..60190925-chr20:55681139..55684614,3	MCF-7	breast:
7	chr17:60096570..60097369-chr17:60186879..60187390,2	K562	blood:
8	chr17:60186794..60189377-chr20:54157916..54161638,5	MCF-7	breast:
9	chr17:60094884..60097281-chr17:60186748..60190045,19	MCF-7	breast:
10	chr17:60186598..60188034-chr17:60256263..60257987,14	MCF-7	breast:
11	chr17:60186732..60187486-chr17:60256737..60257571,2	MCF-7	breast:
12	chr17:60177761..60180120-chr17:60185568..60187531,3	MCF-7	breast:
13	chr17:59940208..59940835-chr17:60186594..60187450,2	MCF-7	breast:
14	chr17:59713075..59713992-chr17:60186546..60187523,4	MCF-7	breast:
15	chr17:60145159..60145872-chr17:60186566..60187474,3	MCF-7	breast:
16	chr17:60186752..60188731-chr20:54155316..54157368,2	MCF-7	breast:
17	chr17:60187076..60192321-chr20:45784789..45789709,12	MCF-7	breast:
18	chr17:60186751..60191502-chr20:54157989..54162123,8	MCF-7	breast:
19	chr17:60183378..60185316-chr17:60186593..60188415,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000136492	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12103770	1.00[EUR][1000 genomes]
rs16945866	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28670441	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4968411	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4968482	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7212697	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73327634	1.00[EUR][1000 genomes]
rs73338410	1.00[EUR][1000 genomes]
rs73338442	1.00[EUR][1000 genomes]
rs73991963	1.00[AMR][1000 genomes]
rs8074607	1.00[EUR][1000 genomes]
rs9890405	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9894102	1.00[EUR][1000 genomes]
rs9897373	1.00[EUR][1000 genomes]
rs9897713	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9898702	1.00[EUR][1000 genomes]
rs9900110	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9905100	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9907962	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9910074	1.00[AMR][1000 genomes]
rs9913415	1.00[EUR][1000 genomes]
rs9916871	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062816	chr17:60074670-60470465	Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
2	esv2753884	chr17:60077852-60190630	Strong transcription Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	esv2755037	chr17:60086508-60386211	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
4	esv3415630	chr17:60124819-60401635	Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
5	nsv833507	chr17:60174659-60369541	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	nsv469887	chr17:60176679-60381899	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
7	nsv482579	chr17:60176679-60381899	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:60184200-60188400	Weak transcription	Fetal Intestine Large	intestine
2	chr17:60184200-60189200	Weak transcription	K562	blood
3	chr17:60184400-60188200	Weak transcription	Fetal Intestine Small	intestine
4	chr17:60184600-60187400	Weak transcription	Duodenum Mucosa	Duodenum
5	chr17:60186600-60188800	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr17:60186600-60189200	Enhancers	HepG2	liver
7	chr17:60186800-60188200	Enhancers	Rectal Mucosa Donor 29	rectum
8	chr17:60186800-60189800	Enhancers	A549	lung
9	chr17:60187000-60189000	Weak transcription	GM12878-XiMat	blood
10	chr17:60187000-60189800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr17:60187200-60188400	Weak transcription	Stomach Mucosa	stomach

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