Variant report

Variant	rs9916871
Chromosome Location	chr17:60175687-60175688
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:60175247..60178063-chr17:60178504..60180978,2	MCF-7	breast:
2	chr17:60169141..60172371-chr17:60175299..60177766,3	MCF-7	breast:
3	chr17:60142328..60143978-chr17:60175405..60177008,2	K562	blood:
4	chr17:60173989..60176014-chr17:60177533..60180663,4	K562	blood:
5	chr17:60158973..60160546-chr17:60174535..60176288,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000108510	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12103770	1.00[EUR][1000 genomes]
rs16945866	1.00[EUR][1000 genomes]
rs28670441	1.00[EUR][1000 genomes]
rs4968411	1.00[EUR][1000 genomes]
rs4968482	1.00[EUR][1000 genomes]
rs7212697	1.00[EUR][1000 genomes]
rs73327634	1.00[EUR][1000 genomes]
rs73338410	1.00[EUR][1000 genomes]
rs73338442	1.00[EUR][1000 genomes]
rs8074607	1.00[EUR][1000 genomes]
rs9890405	1.00[EUR][1000 genomes]
rs9894102	1.00[EUR][1000 genomes]
rs9897373	1.00[EUR][1000 genomes]
rs9897713	1.00[EUR][1000 genomes]
rs9898702	1.00[EUR][1000 genomes]
rs9899173	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9900110	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9905100	1.00[EUR][1000 genomes]
rs9907962	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9913415	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062816	chr17:60074670-60470465	Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
2	esv2753884	chr17:60077852-60190630	Strong transcription Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	esv2755037	chr17:60086508-60386211	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
4	esv3415630	chr17:60124819-60401635	Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
5	nsv833507	chr17:60174659-60369541	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:60171000-60175800	Weak transcription	K562	blood
2	chr17:60171800-60176200	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr17:60172000-60176400	Weak transcription	Pancreas	Pancrea
4	chr17:60174000-60176400	Weak transcription	HepG2	liver
5	chr17:60174000-60177800	Weak transcription	Liver	Liver
6	chr17:60174000-60182200	Weak transcription	Aorta	Aorta
7	chr17:60175000-60177200	Enhancers	Primary B cells from cord blood	blood
8	chr17:60175000-60177400	Enhancers	Primary B cells from peripheral blood	blood
9	chr17:60175200-60179600	Enhancers	Fetal Intestine Small	intestine
10	chr17:60175400-60177000	Enhancers	Duodenum Mucosa	Duodenum
11	chr17:60175600-60176000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
12	chr17:60175600-60176600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
13	chr17:60175600-60176800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
14	chr17:60175600-60176800	Flanking Active TSS	GM12878-XiMat	blood
15	chr17:60175600-60177400	Enhancers	Small Intestine	intestine

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