Variant report

Variant	rs9906728
Chromosome Location	chr17:16533676-16533677
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 122 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:113)

rs_ID	r²[population]
rs1005369	1.00[ASN][1000 genomes]
rs1005370	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12051673	0.96[ASN][1000 genomes]
rs12051751	0.88[EUR][1000 genomes]
rs12103873	0.84[ASN][1000 genomes]
rs16959857	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16959869	1.00[ASN][1000 genomes]
rs16959870	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28431824	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28458310	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28458353	0.98[ASN][1000 genomes]
rs28525101	0.81[ASN][1000 genomes]
rs28525658	0.95[ASN][1000 genomes]
rs28526077	0.88[ASN][1000 genomes]
rs28612609	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28626982	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28636605	0.95[ASN][1000 genomes]
rs28674185	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28751872	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28754336	0.98[ASN][1000 genomes]
rs28792801	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28826699	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28865976	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28875211	1.00[ASN][1000 genomes]
rs3813762	1.00[ASN][1000 genomes]
rs4239135	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4352086	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4791672	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4791673	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4791676	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4791678	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4792757	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4792760	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4792761	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4792762	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs5000166	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55920274	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56303920	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57305125	0.95[EUR][1000 genomes]
rs57448521	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57694811	0.95[EUR][1000 genomes]
rs58164310	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59486407	0.98[ASN][1000 genomes]
rs59594997	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59826203	1.00[ASN][1000 genomes]
rs62072781	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62072790	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62072792	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62072845	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62073660	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6502514	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7208075	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7213274	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7217544	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7217717	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7218241	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7219632	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7221518	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7222622	0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7222875	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7225641	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7226328	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72637355	0.95[ASN][1000 genomes]
rs72637356	1.00[ASN][1000 genomes]
rs72637357	1.00[ASN][1000 genomes]
rs72637358	1.00[ASN][1000 genomes]
rs72637359	0.98[ASN][1000 genomes]
rs72637360	0.98[ASN][1000 genomes]
rs72637361	0.85[ASN][1000 genomes]
rs72637362	0.87[ASN][1000 genomes]
rs72637363	0.83[ASN][1000 genomes]
rs8065558	1.00[ASN][1000 genomes]
rs8068349	0.98[ASN][1000 genomes]
rs8069286	0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs8074285	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8074464	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8074487	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8075988	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8076849	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8082225	0.98[ASN][1000 genomes]
rs8082323	0.95[EUR][1000 genomes]
rs8082462	0.95[EUR][1000 genomes]
rs8082650	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9889227	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9890123	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9890698	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9891138	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9892170	0.85[EUR][1000 genomes]
rs9894637	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9898888	0.87[ASN][1000 genomes]
rs9899785	0.98[ASN][1000 genomes]
rs9899919	0.98[ASN][1000 genomes]
rs9901145	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9904901	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9905710	0.97[ASN][1000 genomes]
rs9906261	1.00[ASN][1000 genomes]
rs9907785	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9908015	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9908390	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9909044	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9909955	0.99[ASN][1000 genomes]
rs9910087	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9910842	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9911162	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9911524	0.98[ASN][1000 genomes]
rs9911608	0.98[ASN][1000 genomes]
rs9911677	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9911820	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9911851	1.00[ASN][1000 genomes]
rs9915121	0.84[ASN][1000 genomes]
rs9916069	0.98[ASN][1000 genomes]
rs9916258	0.98[ASN][1000 genomes]
rs9916819	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv934185	chr17:15552960-16551197	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	190 gene(s)	inside rSNPs	diseases
2	esv3330182	chr17:15652014-16569534	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	177 gene(s)	inside rSNPs	diseases
3	esv3446844	chr17:15654843-16572246	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	177 gene(s)	inside rSNPs	diseases
4	nsv1063459	chr17:15804228-16543593	Weak transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	164 gene(s)	inside rSNPs	diseases
5	nsv1063764	chr17:16171649-16662914	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	120 gene(s)	inside rSNPs	diseases
6	nsv1058448	chr17:16389870-16926287	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
7	esv2758442	chr17:16527056-16817437	Active TSS Bivalent Enhancer ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
8	esv2758676	chr17:16527056-16817437	Weak transcription Bivalent Enhancer Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
9	nsv427991	chr17:16527056-16817437	Flanking Active TSS Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:16519800-16540000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr17:16521200-16534200	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
3	chr17:16522000-16540000	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr17:16523000-16540400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr17:16523400-16534000	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr17:16523400-16534000	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
7	chr17:16523400-16537000	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr17:16523400-16538400	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr17:16524600-16539400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr17:16525800-16538200	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr17:16525800-16538400	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
12	chr17:16525800-16539800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr17:16526600-16533800	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
14	chr17:16527200-16542200	Weak transcription	Fetal Heart	heart
15	chr17:16527800-16533800	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr17:16527800-16534600	Weak transcription	Brain Angular Gyrus	brain
17	chr17:16527800-16534800	Weak transcription	Brain Anterior Caudate	brain
18	chr17:16527800-16535400	Weak transcription	Rectal Smooth Muscle	rectum
19	chr17:16527800-16537000	Weak transcription	Psoas Muscle	Psoas
20	chr17:16527800-16556000	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr17:16528000-16534800	Weak transcription	Brain Cingulate Gyrus	brain
22	chr17:16528000-16536000	Weak transcription	NH-A	brain
23	chr17:16528000-16537600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr17:16528000-16556000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
25	chr17:16528200-16534800	Weak transcription	Pancreas	Pancrea
26	chr17:16528600-16534600	Weak transcription	Fetal Brain Female	brain
27	chr17:16528600-16534600	Weak transcription	Pancreatic Islets	Pancreatic Islet
28	chr17:16528600-16535400	Weak transcription	Colon Smooth Muscle	Colon
29	chr17:16528600-16536800	Weak transcription	Fetal Brain Male	brain
30	chr17:16529000-16538000	Strong transcription	Fetal Lung	lung
31	chr17:16529200-16533800	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr17:16529800-16534200	Strong transcription	Primary T cells from cord blood	blood
33	chr17:16530000-16535000	Weak transcription	Fetal Kidney	kidney
34	chr17:16530000-16555400	Weak transcription	Small Intestine	intestine
35	chr17:16530200-16535000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
36	chr17:16530200-16540000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr17:16530400-16534800	Weak transcription	Left Ventricle	heart
38	chr17:16531000-16534000	Weak transcription	Brain Hippocampus Middle	brain
39	chr17:16531000-16534200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr17:16531000-16534600	Weak transcription	Stomach Smooth Muscle	stomach
41	chr17:16531000-16535200	Weak transcription	NHDF-Ad	bronchial
42	chr17:16531200-16534200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
43	chr17:16531200-16534200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr17:16531200-16534600	Weak transcription	Skeletal Muscle Female	skeletal muscle
45	chr17:16531200-16534800	Weak transcription	Brain Substantia Nigra	brain
46	chr17:16531200-16534800	Weak transcription	Duodenum Mucosa	Duodenum
47	chr17:16531200-16535200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
48	chr17:16531200-16535600	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
49	chr17:16531200-16538200	Strong transcription	Duodenum Smooth Muscle	Duodenum
50	chr17:16531200-16556200	Weak transcription	Right Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links