Variant report

Variant	rs9938511
Chromosome Location	chr16:79966132-79966133
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10514470	0.84[ASN][1000 genomes]
rs12445463	0.90[CEU][hapmap];0.89[CHB][hapmap]
rs12445495	0.95[CEU][hapmap];0.85[CHB][hapmap]
rs12448083	0.95[CEU][hapmap];0.85[CHB][hapmap];0.85[JPT][hapmap]
rs4264404	0.80[ASN][1000 genomes]
rs4506913	0.84[ASN][1000 genomes]
rs4545828	0.85[ASN][1000 genomes]
rs4550466	0.87[ASN][1000 genomes]
rs9925844	0.87[ASN][1000 genomes]
rs9936254	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:79964400-79967200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr16:79965000-79970200	Weak transcription	Fetal Lung	lung
3	chr16:79965400-79968800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr16:79965600-79966600	Enhancers	Duodenum Mucosa	Duodenum
5	chr16:79965800-79967000	Enhancers	Fetal Intestine Large	intestine
6	chr16:79965800-79968800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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