Variant report

Variant	rs4545828
Chromosome Location	chr16:79966955-79966956
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:79946693..79948591-chr16:79965174..79967868,2	K562	blood:
2	chr16:79961982..79964503-chr16:79966893..79969086,2	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10514470	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10871381	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11150229	0.82[EUR][1000 genomes]
rs11861061	0.83[EUR][1000 genomes]
rs11866704	0.81[EUR][1000 genomes]
rs12445439	0.95[EUR][1000 genomes]
rs12445463	0.95[CEU][hapmap];0.81[CHB][hapmap];0.95[EUR][1000 genomes]
rs12445495	0.91[CEU][hapmap];0.82[CHB][hapmap];0.95[EUR][1000 genomes]
rs12448083	0.91[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28505112	0.80[ASN][1000 genomes]
rs4130728	0.81[EUR][1000 genomes]
rs4132185	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4243186	0.85[EUR][1000 genomes]
rs4243189	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4243190	0.80[EUR][1000 genomes]
rs4264404	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4436791	0.80[EUR][1000 genomes]
rs4444353	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4445915	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4506912	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4506913	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4550466	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4627367	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4889045	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4889046	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4889049	0.92[EUR][1000 genomes]
rs6564713	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6564714	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6564715	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6564718	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7196036	0.82[EUR][1000 genomes]
rs7203273	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7203693	0.86[EUR][1000 genomes]
rs7204343	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7205599	0.80[EUR][1000 genomes]
rs8043932	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8062687	0.80[EUR][1000 genomes]
rs8063142	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9925844	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9936254	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9938511	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:79964400-79967200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr16:79965000-79970200	Weak transcription	Fetal Lung	lung
3	chr16:79965400-79968800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr16:79965800-79967000	Enhancers	Fetal Intestine Large	intestine
5	chr16:79965800-79968800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr16:79966400-79967000	Enhancers	Fetal Intestine Small	intestine
7	chr16:79966400-79967000	Enhancers	A549	lung
8	chr16:79966800-79967200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr16:79966800-79967800	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr16:79966800-79968400	Enhancers	Cortex derived primary cultured neurospheres	brain

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