Variant report

Variant	rs4130728
Chromosome Location	chr16:79952222-79952223
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10514470	0.81[EUR][1000 genomes]
rs10871381	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11150229	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11861061	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11866704	0.83[EUR][1000 genomes]
rs12445439	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12445463	0.95[CEU][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12445495	0.91[CEU][hapmap];0.83[CHB][hapmap];0.83[JPT][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12448083	0.91[CEU][hapmap];0.83[CHB][hapmap];0.86[JPT][hapmap];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28505112	0.86[ASN][1000 genomes]
rs4132185	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4243186	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4243190	0.83[EUR][1000 genomes]
rs4436791	0.83[EUR][1000 genomes]
rs4444353	0.88[EUR][1000 genomes]
rs4506912	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4506913	0.81[EUR][1000 genomes]
rs4545828	0.81[EUR][1000 genomes]
rs4889045	0.80[EUR][1000 genomes]
rs4889046	0.82[EUR][1000 genomes]
rs6564713	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6564714	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6564715	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs71391506	0.81[ASN][1000 genomes]
rs7195655	0.93[ASN][1000 genomes]
rs7196036	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7203273	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7204343	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7205599	0.83[EUR][1000 genomes]
rs8043932	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8062687	0.83[EUR][1000 genomes]
rs8063142	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9925844	0.80[EUR][1000 genomes]
rs9936254	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:79944800-79952800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr16:79945200-79952800	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr16:79949400-79953000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr16:79949600-79952600	Weak transcription	Ovary	ovary
5	chr16:79949600-79952800	Weak transcription	Fetal Lung	lung
6	chr16:79949800-79952600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr16:79949800-79952600	Weak transcription	Fetal Intestine Large	intestine
8	chr16:79950000-79952800	Weak transcription	Fetal Intestine Small	intestine
9	chr16:79950000-79954600	Weak transcription	Duodenum Mucosa	Duodenum
10	chr16:79951000-79952800	Enhancers	GM12878-XiMat	blood

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