Variant report

Variant	rs4243186
Chromosome Location	chr16:79963895-79963896
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:79961982..79964503-chr16:79966893..79969086,2	K562	blood:
2	chr16:79963167..79965243-chr16:80003069..80005139,2	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10514470	0.85[EUR][1000 genomes]
rs10871381	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11150229	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11861061	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11866704	0.88[EUR][1000 genomes]
rs12445439	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12445463	0.86[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12445495	0.92[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12448083	0.91[CEU][hapmap];0.87[CHB][hapmap];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28505112	0.91[ASN][1000 genomes]
rs4130728	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4132185	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4243190	0.87[EUR][1000 genomes]
rs4264404	0.82[EUR][1000 genomes]
rs4436791	0.87[EUR][1000 genomes]
rs4444353	0.92[EUR][1000 genomes]
rs4445915	0.82[EUR][1000 genomes]
rs4506912	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4506913	0.85[EUR][1000 genomes]
rs4545828	0.85[EUR][1000 genomes]
rs4550466	0.82[EUR][1000 genomes]
rs4627367	0.83[EUR][1000 genomes]
rs4889045	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4889046	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6564713	0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6564714	0.84[EUR][1000 genomes]
rs6564715	0.84[EUR][1000 genomes]
rs6564718	0.83[EUR][1000 genomes]
rs71391506	0.84[ASN][1000 genomes]
rs7195655	0.82[ASN][1000 genomes]
rs7196036	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7203273	0.84[EUR][1000 genomes]
rs7204343	0.84[EUR][1000 genomes]
rs7205599	0.87[EUR][1000 genomes]
rs8043932	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8062687	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs8063142	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9925844	0.84[EUR][1000 genomes]
rs9936254	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:79961000-79964400	Enhancers	Fetal Stomach	stomach
2	chr16:79961400-79965000	Enhancers	Ovary	ovary
3	chr16:79962400-79964200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr16:79962400-79964200	Enhancers	Stomach Smooth Muscle	stomach
5	chr16:79962400-79964400	Enhancers	Duodenum Smooth Muscle	Duodenum
6	chr16:79962400-79965600	Weak transcription	Duodenum Mucosa	Duodenum
7	chr16:79962800-79964200	Enhancers	Colon Smooth Muscle	Colon
8	chr16:79962800-79964400	Enhancers	Rectal Smooth Muscle	rectum
9	chr16:79962800-79965000	Enhancers	Fetal Lung	lung
10	chr16:79963800-79964000	Enhancers	Fetal Intestine Large	intestine
11	chr16:79963800-79964400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr16:79963800-79964400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr16:79963800-79964800	Enhancers	Aorta	Aorta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links