Variant report

Variant	rs6564714
Chromosome Location	chr16:79952959-79952960
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:79797491..79800172-chr16:79952786..79955105,2	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10514470	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10871381	0.81[EUR][1000 genomes]
rs11150229	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11861061	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12445439	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12445463	0.95[CEU][hapmap];0.95[CHB][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12445495	0.91[CEU][hapmap];0.91[CHB][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12448083	0.91[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4130728	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4132185	0.81[EUR][1000 genomes]
rs4243186	0.84[EUR][1000 genomes]
rs4243189	0.85[EUR][1000 genomes]
rs4264404	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4445915	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4506912	0.81[EUR][1000 genomes]
rs4506913	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4545828	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4550466	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4627367	0.89[EUR][1000 genomes]
rs4889045	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4889046	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4889049	0.85[EUR][1000 genomes]
rs6564713	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6564715	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6564718	0.89[EUR][1000 genomes]
rs7195655	0.81[ASN][1000 genomes]
rs7196036	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7203273	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7203693	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7204343	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8043932	0.81[EUR][1000 genomes]
rs8063142	0.81[EUR][1000 genomes]
rs9925844	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9936254	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:79949400-79953000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr16:79950000-79954600	Weak transcription	Duodenum Mucosa	Duodenum
3	chr16:79952600-79953000	Enhancers	Colon Smooth Muscle	Colon
4	chr16:79952600-79953200	Enhancers	Fetal Thymus	thymus
5	chr16:79952600-79953400	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr16:79952600-79953400	Enhancers	Ovary	ovary
7	chr16:79952600-79953600	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr16:79952600-79955000	Enhancers	Fetal Intestine Large	intestine
9	chr16:79952800-79953000	Enhancers	Fetal Lung	lung
10	chr16:79952800-79953200	Flanking Active TSS	GM12878-XiMat	blood
11	chr16:79952800-79953400	Enhancers	Primary T cells from cord blood	blood
12	chr16:79952800-79953800	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr16:79952800-79953800	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr16:79952800-79953800	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr16:79952800-79954000	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr16:79952800-79954000	Enhancers	Fetal Intestine Small	intestine

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