Variant report
| Variant | rs7203693 |
|---|---|
| Chromosome Location | chr16:79959562-79959563 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr11:67068799..67070611-chr16:79957014..79959593,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000172932 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs10514470 | 0.86[EUR][1000 genomes] |
| rs12445439 | 0.87[EUR][1000 genomes] |
| rs12445463 | 0.87[EUR][1000 genomes] |
| rs12445495 | 0.87[EUR][1000 genomes] |
| rs12448083 | 0.92[AFR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs4264404 | 0.85[EUR][1000 genomes] |
| rs4445915 | 0.83[EUR][1000 genomes] |
| rs4506913 | 0.86[EUR][1000 genomes] |
| rs4545828 | 0.86[EUR][1000 genomes] |
| rs4550466 | 0.85[EUR][1000 genomes] |
| rs4627367 | 0.83[EUR][1000 genomes] |
| rs4889045 | 0.87[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs4889046 | 0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs6564714 | 0.85[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs6564715 | 0.85[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs6564718 | 0.83[EUR][1000 genomes] |
| rs71391506 | 0.90[ASN][1000 genomes] |
| rs7203273 | 0.85[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs7204343 | 0.85[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs9925844 | 0.87[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv573285 | chr16:79158182-80127326 | Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 28 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
