Variant report

Variant	rs12448083
Chromosome Location	chr16:79957426-79957427
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:67068799..67070611-chr16:79957014..79959593,2	MCF-7	breast:
2	chr16:79947987..79949634-chr16:79956152..79958868,2	K562	blood:

Variant related genes	Relation type
ENSG00000172932	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10514470	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10871381	0.84[EUR][1000 genomes]
rs11150229	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11861061	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12445439	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12445463	0.95[CEU][hapmap];0.95[CHB][hapmap];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12445495	1.00[CEU][hapmap];1.00[CHB][hapmap];0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28505112	0.83[ASN][1000 genomes]
rs4130728	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4132185	0.84[EUR][1000 genomes]
rs4243186	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4243189	0.87[EUR][1000 genomes]
rs4264404	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4444353	0.81[EUR][1000 genomes]
rs4445915	0.92[EUR][1000 genomes]
rs4506912	0.83[EUR][1000 genomes]
rs4506913	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4545828	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4550466	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4627367	0.91[EUR][1000 genomes]
rs4889045	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4889046	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4889049	0.87[EUR][1000 genomes]
rs6564713	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6564714	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6564715	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6564718	0.91[EUR][1000 genomes]
rs7196036	0.84[EUR][1000 genomes]
rs7203273	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7203693	0.92[AFR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7204343	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8043932	0.84[EUR][1000 genomes]
rs8063142	0.84[EUR][1000 genomes]
rs9925844	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9936254	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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