Variant report
| Variant | rs4243189 |
|---|---|
| Chromosome Location | chr16:79982099-79982100 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs10514470 | 0.87[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs11866704 | 0.88[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs12445439 | 0.87[EUR][1000 genomes] |
| rs12445463 | 0.87[EUR][1000 genomes] |
| rs12445495 | 0.87[EUR][1000 genomes] |
| rs12448083 | 0.87[EUR][1000 genomes] |
| rs4243190 | 0.87[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs4264404 | 0.81[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs4436791 | 0.87[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs4444353 | 0.80[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs4445915 | 0.90[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs4506912 | 0.81[EUR][1000 genomes] |
| rs4506913 | 0.87[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs4545828 | 0.86[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs4550466 | 0.88[EUR][1000 genomes] |
| rs4627367 | 0.94[EUR][1000 genomes] |
| rs4889045 | 0.84[EUR][1000 genomes] |
| rs4889046 | 0.86[EUR][1000 genomes] |
| rs4889049 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs6564714 | 0.85[EUR][1000 genomes] |
| rs6564715 | 0.85[EUR][1000 genomes] |
| rs6564718 | 0.94[EUR][1000 genomes] |
| rs7203273 | 0.85[EUR][1000 genomes] |
| rs7204343 | 0.85[EUR][1000 genomes] |
| rs7205599 | 0.87[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs8062687 | 0.87[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs9925844 | 0.83[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs9936254 | 0.81[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv573285 | chr16:79158182-80127326 | Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 28 gene(s) | inside rSNPs | diseases |
| 2 | nsv1061519 | chr16:79976222-79987278 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr16:79981200-79982400 | Enhancers | Primary Natural Killer cells fromperipheralblood | blood |
