Variant report

Variant	rs11866704
Chromosome Location	chr16:79981536-79981537
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10514470	0.81[EUR][1000 genomes]
rs10871381	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11150229	0.84[EUR][1000 genomes]
rs11150235	0.82[AMR][1000 genomes]
rs11861061	0.86[EUR][1000 genomes]
rs11862161	0.80[AMR][1000 genomes]
rs12051451	0.80[AMR][1000 genomes]
rs12445463	0.91[CEU][hapmap]
rs12445495	0.88[CEU][hapmap]
rs12448083	0.87[CEU][hapmap]
rs4130728	0.83[EUR][1000 genomes]
rs4132185	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4243186	0.88[EUR][1000 genomes]
rs4243189	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4243190	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4436791	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4444353	0.95[EUR][1000 genomes]
rs4445915	0.83[EUR][1000 genomes]
rs4468637	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs4506912	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4506913	0.81[EUR][1000 genomes]
rs4545828	0.81[EUR][1000 genomes]
rs4627367	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4889049	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6564713	0.85[EUR][1000 genomes]
rs6564718	0.83[EUR][1000 genomes]
rs66539665	0.85[AMR][1000 genomes]
rs7188398	0.82[AMR][1000 genomes]
rs7188559	0.82[AMR][1000 genomes]
rs7196036	0.85[EUR][1000 genomes]
rs7205599	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8043932	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs8045969	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs8062687	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8063142	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9936254	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv1061519	chr16:79976222-79987278	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv2760424	chr16:79977619-79981715	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:79981200-79982400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

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