Variant report

Variant	rs4627367
Chromosome Location	chr16:79978234-79978235
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:79978107..79980812-chr16:80004750..80007386,2	K562	blood:
2	chr16:79974991..79977318-chr16:79978031..79980888,2	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10514470	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10871381	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11861061	0.81[EUR][1000 genomes]
rs11866704	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12445439	0.93[EUR][1000 genomes]
rs12445463	0.91[CEU][hapmap];0.93[EUR][1000 genomes]
rs12445495	0.96[CEU][hapmap];0.81[JPT][hapmap];0.93[EUR][1000 genomes]
rs12448083	0.95[CEU][hapmap];0.91[EUR][1000 genomes]
rs4132185	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4243186	0.83[EUR][1000 genomes]
rs4243189	0.94[EUR][1000 genomes]
rs4243190	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4264404	0.93[EUR][1000 genomes]
rs4436791	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4444353	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4445915	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4506912	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4506913	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4545828	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4550466	0.93[EUR][1000 genomes]
rs4889045	0.88[EUR][1000 genomes]
rs4889046	0.91[EUR][1000 genomes]
rs4889049	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6564714	0.89[EUR][1000 genomes]
rs6564715	0.89[EUR][1000 genomes]
rs6564718	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7203273	0.89[EUR][1000 genomes]
rs7203693	0.83[EUR][1000 genomes]
rs7204343	0.89[EUR][1000 genomes]
rs7205599	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs8043932	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8062687	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs8063142	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9925844	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9936254	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv1061519	chr16:79976222-79987278	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv2760424	chr16:79977619-79981715	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4627367	VAT1L	cis	parietal	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:79977600-79978400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr16:79977600-79978400	Enhancers	NHEK	skin
3	chr16:79977600-79978600	Enhancers	Osteobl	bone
4	chr16:79977800-79978600	Enhancers	NH-A	brain

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