Variant report

Variant	rs4550466
Chromosome Location	chr16:79965446-79965447
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:79946693..79948591-chr16:79965174..79967868,2	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10514470	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10871381	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11861061	0.82[EUR][1000 genomes]
rs12445439	0.93[EUR][1000 genomes]
rs12445463	0.93[EUR][1000 genomes]
rs12445495	0.93[EUR][1000 genomes]
rs12448083	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28505112	0.81[ASN][1000 genomes]
rs4132185	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4243186	0.82[EUR][1000 genomes]
rs4243189	0.88[EUR][1000 genomes]
rs4264404	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4444353	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4445915	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4506912	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4506913	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4545828	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4627367	0.93[EUR][1000 genomes]
rs4889045	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4889046	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4889049	0.88[EUR][1000 genomes]
rs6564713	0.80[EUR][1000 genomes]
rs6564714	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6564715	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6564718	0.93[EUR][1000 genomes]
rs7203273	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7203693	0.85[EUR][1000 genomes]
rs7204343	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8043932	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8063142	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9925844	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9936254	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9938511	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	esv998199	chr16:79964705-79965546	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:79962400-79965600	Weak transcription	Duodenum Mucosa	Duodenum
2	chr16:79964000-79965800	Weak transcription	Fetal Intestine Large	intestine
3	chr16:79964400-79965600	Weak transcription	Rectal Smooth Muscle	rectum
4	chr16:79964400-79967200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr16:79965000-79965600	Weak transcription	Ovary	ovary
6	chr16:79965000-79970200	Weak transcription	Fetal Lung	lung
7	chr16:79965400-79968800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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