Variant report

Variant	rs6564715
Chromosome Location	chr16:79954217-79954218
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:79797491..79800172-chr16:79952786..79955105,2	K562	blood:
2	chr16:79946416..79948681-chr16:79953198..79955788,2	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10514470	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10871381	0.81[EUR][1000 genomes]
rs11150229	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11861061	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12445439	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12445463	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12445495	0.96[CEU][hapmap];0.95[CHB][hapmap];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12448083	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28505112	0.82[ASN][1000 genomes]
rs4130728	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4132185	0.81[EUR][1000 genomes]
rs4243186	0.84[EUR][1000 genomes]
rs4243189	0.85[EUR][1000 genomes]
rs4264404	0.91[EUR][1000 genomes]
rs4445915	0.89[EUR][1000 genomes]
rs4506912	0.81[EUR][1000 genomes]
rs4506913	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4545828	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4550466	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4627367	0.89[EUR][1000 genomes]
rs4889045	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4889046	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4889049	0.85[EUR][1000 genomes]
rs6564713	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6564714	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6564718	0.89[EUR][1000 genomes]
rs7196036	0.87[EUR][1000 genomes]
rs7203273	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7203693	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7204343	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8043932	0.81[EUR][1000 genomes]
rs8063142	0.81[EUR][1000 genomes]
rs9925844	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9936254	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:79950000-79954600	Weak transcription	Duodenum Mucosa	Duodenum
2	chr16:79952600-79955000	Enhancers	Fetal Intestine Large	intestine
3	chr16:79953400-79954600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr16:79953400-79954800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr16:79953600-79954800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr16:79954000-79954400	Weak transcription	Fetal Intestine Small	intestine
7	chr16:79954000-79954600	Weak transcription	HUES64 Cell Line	embryonic stem cell

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