Variant report

Variant	rs4436791
Chromosome Location	chr16:79987278-79987279
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10514470	0.80[EUR][1000 genomes]
rs10871381	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11150229	0.84[EUR][1000 genomes]
rs11150235	0.83[AMR][1000 genomes]
rs11861061	0.85[EUR][1000 genomes]
rs11862161	0.82[AMR][1000 genomes]
rs11866704	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12051451	0.82[AMR][1000 genomes]
rs12445463	0.82[CEU][hapmap]
rs12445495	0.87[CEU][hapmap]
rs12448083	0.87[CEU][hapmap]
rs4130728	0.83[EUR][1000 genomes]
rs4132185	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4243186	0.87[EUR][1000 genomes]
rs4243189	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4243190	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4444353	0.93[EUR][1000 genomes]
rs4445915	0.82[EUR][1000 genomes]
rs4468637	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs4506912	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4506913	0.80[EUR][1000 genomes]
rs4545828	0.80[EUR][1000 genomes]
rs4606730	0.81[AMR][1000 genomes]
rs4627367	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4889049	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6564713	0.85[EUR][1000 genomes]
rs6564718	0.81[EUR][1000 genomes]
rs66539665	0.86[AMR][1000 genomes]
rs7188398	0.83[AMR][1000 genomes]
rs7188559	0.83[AMR][1000 genomes]
rs7196036	0.84[EUR][1000 genomes]
rs7205599	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8043932	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs8045969	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs8062687	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8063142	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9936254	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv1061519	chr16:79976222-79987278	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4436791	VAT1L	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:79985800-79989000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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