The 2.0 version of rSNPBase

Variant report

Variant rs10000196
Chromosome Location chr4:88310523-88310524
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:106 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr4:88254800-88311800 Weak transcription Placenta Amnion Placenta Amnion
2 chr4:88256200-88310600 Weak transcription Right Ventricle heart
3 chr4:88257800-88311800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
4 chr4:88276200-88311400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
5 chr4:88293000-88311200 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
6 chr4:88293200-88311400 Weak transcription H9 Cell Line embryonic stem cell
7 chr4:88294000-88311000 Weak transcription HSMM muscle
8 chr4:88294200-88310800 Weak transcription iPS-20b Cell Line embryonic stem cell
9 chr4:88295400-88311200 Weak transcription Aorta Aorta
10 chr4:88297400-88310600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
11 chr4:88297400-88310800 Weak transcription Osteobl bone
12 chr4:88302800-88312000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
13 chr4:88307600-88310600 Enhancers Primary T cells fromperipheralblood blood
14 chr4:88307600-88310600 Enhancers Primary T killer memory cells from peripheral blood blood
15 chr4:88307600-88310800 Enhancers Primary T killer naive cells fromperipheralblood blood
16 chr4:88308000-88310600 Enhancers Primary T helper 17 cells PMA-I stimulated --
17 chr4:88308200-88310800 Enhancers Primary T helper cells fromperipheralblood blood
18 chr4:88308200-88310800 Active TSS GM12878-XiMat blood
19 chr4:88308400-88311000 Enhancers Primary B cells from peripheral blood blood
20 chr4:88308400-88311400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
21 chr4:88308800-88310600 Active TSS Rectal Mucosa Donor 31 rectum
22 chr4:88309000-88310600 Active TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
23 chr4:88309000-88310600 Enhancers Primary T helper memory cells from peripheral blood 1 blood
24 chr4:88309000-88310600 Enhancers Primary T cells effector/memory enriched fromperipheralblood blood
25 chr4:88309000-88312400 Active TSS Skeletal Muscle Female skeletal muscle
26 chr4:88309000-88313200 Active TSS Rectal Smooth Muscle rectum
27 chr4:88309200-88311000 Transcr. at gene 5' and 3' Dnd41 blood
28 chr4:88309400-88310600 Enhancers Lung lung
29 chr4:88309400-88310600 Weak transcription Skeletal Muscle Male skeletal muscle
30 chr4:88309400-88310600 Enhancers Thymus Thymus
31 chr4:88309400-88311200 Flanking Active TSS Liver Liver
32 chr4:88309400-88312800 Active TSS Small Intestine intestine
33 chr4:88309400-88313000 Active TSS NHLF lung
34 chr4:88309600-88310600 Weak transcription Brain Inferior Temporal Lobe brain
35 chr4:88309600-88310600 Enhancers Ovary ovary
36 chr4:88309600-88310800 Enhancers Fetal Thymus thymus
37 chr4:88309600-88311400 Flanking Active TSS Primary T helper naive cells fromperipheralblood blood
38 chr4:88309600-88312800 Active TSS Stomach Mucosa stomach
39 chr4:88309600-88313200 Active TSS Psoas Muscle Psoas
40 chr4:88309600-88313200 Active TSS Rectal Mucosa Donor 29 rectum
41 chr4:88309600-88313400 Active TSS Stomach Smooth Muscle stomach
42 chr4:88309800-88310600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
43 chr4:88309800-88310600 Active TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
44 chr4:88309800-88310600 Active TSS Primary hematopoietic stem cells blood
45 chr4:88309800-88310600 Enhancers Primary Natural Killer cells fromperipheralblood blood
46 chr4:88309800-88310600 Active TSS Primary hematopoietic stem cells G-CSF-mobilized Female --
47 chr4:88309800-88310600 Active TSS Primary mononuclear cells fromperipheralblood Blood
48 chr4:88309800-88310600 Active TSS Adipose Nuclei Adipose
49 chr4:88309800-88310600 Weak transcription Brain Germinal Matrix brain
50 chr4:88309800-88310600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain

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Last update: Aug 31, 2015