Variant report

Variant	rs67121411
Chromosome Location	chr4:88317853-88317854
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:88310656..88314855-chr4:88317289..88320224,5	K562	blood:
2	chr4:88316653..88318560-chr4:88321316..88323311,2	K562	blood:

Variant related genes	Relation type
ENSG00000198189	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10000196	0.94[ASN][1000 genomes]
rs10009948	0.94[ASN][1000 genomes]
rs10023606	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10024781	0.92[ASN][1000 genomes]
rs10030035	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10032122	0.94[ASN][1000 genomes]
rs10084883	0.95[ASN][1000 genomes]
rs12640451	0.94[ASN][1000 genomes]
rs12640894	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12650763	0.95[ASN][1000 genomes]
rs12651034	0.95[ASN][1000 genomes]
rs28366407	0.99[ASN][1000 genomes]
rs28415220	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28437709	0.94[ASN][1000 genomes]
rs28493315	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28493566	0.94[ASN][1000 genomes]
rs28529046	0.96[ASN][1000 genomes]
rs28535549	0.94[ASN][1000 genomes]
rs28696943	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28712618	0.95[ASN][1000 genomes]
rs28718986	0.94[ASN][1000 genomes]
rs28762371	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs28805573	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs34027531	0.86[ASN][1000 genomes]
rs4411944	0.86[ASN][1000 genomes]
rs55824708	0.95[ASN][1000 genomes]
rs56153912	0.97[ASN][1000 genomes]
rs58192677	0.94[ASN][1000 genomes]
rs68045074	0.95[ASN][1000 genomes]
rs72652067	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7665115	0.95[ASN][1000 genomes]
rs7673763	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7677249	0.95[ASN][1000 genomes]
rs7680878	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7690728	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9995987	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9998212	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004518	chr4:88218473-88354403	Weak transcription Active TSS Genic enhancers Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv1002789	chr4:88239340-88606485	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:88313000-88320400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr4:88313000-88320400	Weak transcription	Pancreas	Pancrea
3	chr4:88313200-88320800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links