The 2.0 version of rSNPBase

Variant report

Variant rs28415220
Chromosome Location chr4:88311800-88311801
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:140 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr4:88254800-88311800 Weak transcription Placenta Amnion Placenta Amnion
2 chr4:88257800-88311800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
3 chr4:88302800-88312000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
4 chr4:88309000-88312400 Active TSS Skeletal Muscle Female skeletal muscle
5 chr4:88309000-88313200 Active TSS Rectal Smooth Muscle rectum
6 chr4:88309400-88312800 Active TSS Small Intestine intestine
7 chr4:88309400-88313000 Active TSS NHLF lung
8 chr4:88309600-88312800 Active TSS Stomach Mucosa stomach
9 chr4:88309600-88313200 Active TSS Psoas Muscle Psoas
10 chr4:88309600-88313200 Active TSS Rectal Mucosa Donor 29 rectum
11 chr4:88309600-88313400 Active TSS Stomach Smooth Muscle stomach
12 chr4:88309800-88312800 Active TSS Colonic Mucosa Colon
13 chr4:88309800-88313000 Active TSS Colon Smooth Muscle Colon
14 chr4:88309800-88313000 Active TSS Fetal Intestine Large intestine
15 chr4:88309800-88313000 Active TSS Sigmoid Colon Sigmoid Colon
16 chr4:88309800-88313200 Active TSS Right Atrium heart
17 chr4:88310000-88312200 Bivalent/Poised TSS HepG2 liver
18 chr4:88310000-88312600 Active TSS Primary hematopoietic stem cells short term culture blood
19 chr4:88310000-88312800 Active TSS Fetal Intestine Small intestine
20 chr4:88310000-88313200 Active TSS Brain Anterior Caudate brain
21 chr4:88310000-88313400 Active TSS K562 blood
22 chr4:88310200-88312800 Active TSS Hela-S3 cervix
23 chr4:88310400-88311800 Flanking Active TSS Primary T regulatory cells fromperipheralblood blood
24 chr4:88310400-88313000 Active TSS hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
25 chr4:88310400-88313200 Active TSS Left Ventricle heart
26 chr4:88310600-88311800 Flanking Active TSS Primary T helper cells PMA-I stimulated --
27 chr4:88310600-88312000 Flanking Active TSS Primary hematopoietic stem cells blood
28 chr4:88310600-88312200 Flanking Active TSS Primary B cells from cord blood blood
29 chr4:88310600-88312800 Active TSS HUES6 Cell Line embryonic stem cell
30 chr4:88310600-88313000 Active TSS Brain Inferior Temporal Lobe brain
31 chr4:88310600-88313000 Active TSS Fetal Kidney kidney
32 chr4:88310600-88313000 Active TSS Fetal Stomach stomach
33 chr4:88310600-88313200 Active TSS ES-I3 Cell Line embryonic stem cell
34 chr4:88310600-88313200 Active TSS H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
35 chr4:88310600-88313200 Active TSS A549 lung
36 chr4:88310600-88313400 Active TSS Pancreatic Islets Pancreatic Islet
37 chr4:88310800-88312200 Flanking Active TSS Primary T helper cells fromperipheralblood blood
38 chr4:88310800-88312600 Active TSS Pancreas Pancrea
39 chr4:88310800-88312800 Active TSS Fetal Brain Female brain
40 chr4:88310800-88313000 Active TSS hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
41 chr4:88310800-88313000 Active TSS Brain Germinal Matrix brain
42 chr4:88310800-88313000 Active TSS Esophagus oesophagus
43 chr4:88310800-88313000 Active TSS Lung lung
44 chr4:88310800-88313200 Active TSS IMR90 fetal lung fibroblasts Cell Line lung
45 chr4:88310800-88313200 Active TSS Foreskin Fibroblast Primary Cells skin02 Skin
46 chr4:88310800-88313200 Active TSS Foreskin Melanocyte Primary Cells skin01 Skin
47 chr4:88310800-88313200 Active TSS Brain Angular Gyrus brain
48 chr4:88310800-88313200 Active TSS Brain Dorsolateral Prefrontal Cortex brain
49 chr4:88310800-88313200 Active TSS Brain Substantia Nigra brain
50 chr4:88310800-88313200 Active TSS Ovary ovary

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Last update: Aug 31, 2015