Variant report

Variant	rs28366407
Chromosome Location	chr4:88313876-88313877
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:88311663..88314102-chr4:88359641..88363442,4	K562	blood:
2	chr4:88309813..88313902-chr4:88342245..88346379,5	K562	blood:
3	chr4:88275401..88278298-chr4:88313681..88315567,2	K562	blood:
4	chr4:88310667..88314164-chr4:88342247..88345345,4	K562	blood:

Variant related genes	Relation type
ENSG00000170502	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10000196	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10009948	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10023606	0.96[ASN][1000 genomes]
rs10024781	0.91[ASN][1000 genomes]
rs10030035	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10032122	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10084883	0.94[ASN][1000 genomes]
rs12640451	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12640894	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12648665	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12650763	0.94[ASN][1000 genomes]
rs12651034	0.94[ASN][1000 genomes]
rs28415220	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs28437709	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28493315	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs28493566	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28529046	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28535549	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28696943	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs28712618	0.94[ASN][1000 genomes]
rs28718986	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28762371	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28805573	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34027531	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4411944	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs55824708	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56153912	0.96[ASN][1000 genomes]
rs58192677	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67121411	0.99[ASN][1000 genomes]
rs68045074	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72652067	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7665115	0.94[ASN][1000 genomes]
rs7673763	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7677249	0.94[ASN][1000 genomes]
rs7680878	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7690728	0.96[ASN][1000 genomes]
rs9995987	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9998212	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004518	chr4:88218473-88354403	Weak transcription Active TSS Genic enhancers Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv1002789	chr4:88239340-88606485	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:88313000-88320400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr4:88313000-88320400	Weak transcription	Pancreas	Pancrea
3	chr4:88313200-88315600	Weak transcription	Right Atrium	heart
4	chr4:88313200-88320800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr4:88313400-88314000	Enhancers	HepG2	liver
6	chr4:88313600-88316000	Weak transcription	Primary T cells from cord blood	blood

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