Variant report

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10003944	1.00[AMR][1000 genomes]
rs10010949	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10011035	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10012917	1.00[AMR][1000 genomes]
rs10016209	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10019230	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10024734	1.00[AMR][1000 genomes]
rs10028666	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10305849	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10305881	1.00[AMR][1000 genomes]
rs10305883	1.00[AMR][1000 genomes]
rs11939191	1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs11943100	1.00[AMR][1000 genomes]
rs11943383	1.00[AMR][1000 genomes]
rs13435440	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1400557	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1517135	1.00[MEX][hapmap]
rs16998721	0.84[LWK][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28386186	1.00[AMR][1000 genomes]
rs28572568	1.00[AMR][1000 genomes]
rs28679567	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28687346	1.00[AMR][1000 genomes]
rs28808633	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28889981	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs955558	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9884495	1.00[AMR][1000 genomes]
rs9993718	1.00[AMR][1000 genomes]
rs9993720	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9997823	1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs9999853	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830109	chr4:148295061-148468605	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:148374600-148375000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr4:148374600-148375200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:148374600-148375200	Enhancers	HMEC	breast
4	chr4:148374800-148375200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr4:148374800-148375200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr4:148374800-148375200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr4:148374800-148375200	Enhancers	Ovary	ovary
8	chr4:148374800-148375200	Enhancers	Hela-S3	cervix
9	chr4:148374800-148375200	Flanking Active TSS	NHEK	skin

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