Variant report

Variant	rs28687346
Chromosome Location	chr4:148364939-148364940
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10001478	1.00[AMR][1000 genomes]
rs10003944	1.00[AMR][1000 genomes]
rs10010949	1.00[AMR][1000 genomes]
rs10011035	1.00[AMR][1000 genomes]
rs10012917	1.00[AMR][1000 genomes]
rs10016209	1.00[AMR][1000 genomes]
rs10019230	1.00[AMR][1000 genomes]
rs10024734	1.00[AMR][1000 genomes]
rs10028666	1.00[AMR][1000 genomes]
rs10305849	1.00[AMR][1000 genomes]
rs10305881	1.00[AMR][1000 genomes]
rs10305883	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11939191	1.00[AMR][1000 genomes]
rs11943100	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11943383	1.00[AMR][1000 genomes]
rs13435440	1.00[AMR][1000 genomes]
rs1400557	1.00[AMR][1000 genomes]
rs16998721	1.00[AMR][1000 genomes]
rs28386186	1.00[AMR][1000 genomes]
rs28572568	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28679567	1.00[AMR][1000 genomes]
rs28808633	1.00[AMR][1000 genomes]
rs28889981	1.00[AMR][1000 genomes]
rs955558	1.00[AMR][1000 genomes]
rs9884495	1.00[AMR][1000 genomes]
rs9993718	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9993720	1.00[AMR][1000 genomes]
rs9997823	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830109	chr4:148295061-148468605	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:148364000-148369000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr4:148364200-148368400	Weak transcription	NHEK	skin
3	chr4:148364400-148367400	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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