Variant report

Variant	rs10019230
Chromosome Location	chr4:148415612-148415613
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10001478	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10003944	1.00[AMR][1000 genomes]
rs10010949	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10011035	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10012917	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10016209	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10024734	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10028666	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10305849	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10305881	1.00[AMR][1000 genomes]
rs10305883	1.00[AMR][1000 genomes]
rs11939191	1.00[AMR][1000 genomes]
rs11943100	1.00[AMR][1000 genomes]
rs11943383	1.00[AMR][1000 genomes]
rs13435440	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1400557	1.00[AMR][1000 genomes]
rs16998721	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28386186	1.00[AMR][1000 genomes]
rs28572568	1.00[AMR][1000 genomes]
rs28679567	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28687346	1.00[AMR][1000 genomes]
rs28808633	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28889981	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs955558	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9884495	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9993718	1.00[AMR][1000 genomes]
rs9993720	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9997823	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830109	chr4:148295061-148468605	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv1028958	chr4:148377752-148793485	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv880241	chr4:148411178-148461073	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:148403800-148417600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:148404200-148418800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr4:148404200-148419000	Weak transcription	HMEC	breast
4	chr4:148404600-148419000	Weak transcription	NHLF	lung
5	chr4:148405800-148416000	Weak transcription	Spleen	Spleen
6	chr4:148408400-148416800	Weak transcription	Right Ventricle	heart
7	chr4:148414200-148417600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr4:148414200-148419400	Weak transcription	Fetal Muscle Leg	muscle
9	chr4:148414200-148419400	Weak transcription	HSMMtube	muscle
10	chr4:148414200-148430400	Weak transcription	Aorta	Aorta
11	chr4:148414400-148417000	Enhancers	Fetal Heart	heart
12	chr4:148414400-148419000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr4:148414400-148419000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr4:148414400-148419000	Weak transcription	Osteobl	bone
15	chr4:148414400-148419400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr4:148414400-148447400	Weak transcription	Fetal Stomach	stomach
17	chr4:148414600-148419000	Weak transcription	NH-A	brain
18	chr4:148414600-148419200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr4:148414600-148419400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr4:148414800-148419000	Weak transcription	NHDF-Ad	bronchial
21	chr4:148415400-148415800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr4:148415400-148415800	ZNF genes & repeats	Fetal Kidney	kidney
23	chr4:148415400-148415800	ZNF genes & repeats	Fetal Lung	lung
24	chr4:148415400-148415800	Enhancers	NHEK	skin
25	chr4:148415400-148416400	Enhancers	Breast Myoepithelial Primary Cells	Breast
26	chr4:148415600-148415800	Enhancers	Right Atrium	heart
27	chr4:148415600-148416200	Enhancers	Lung	lung
28	chr4:148415600-148416400	Enhancers	Left Ventricle	heart
29	chr4:148415600-148416800	Enhancers	Ovary	ovary

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