Variant report

Variant	rs955558
Chromosome Location	chr4:148382504-148382505
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10001478	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10003944	1.00[AMR][1000 genomes]
rs10010949	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10011035	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10012917	1.00[AMR][1000 genomes]
rs10016209	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10019230	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10024734	1.00[AMR][1000 genomes]
rs10028666	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10305849	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10305881	1.00[AMR][1000 genomes]
rs10305883	1.00[AMR][1000 genomes]
rs11939191	1.00[AMR][1000 genomes]
rs11943100	1.00[AMR][1000 genomes]
rs11943383	1.00[AMR][1000 genomes]
rs13435440	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1400557	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16998721	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28386186	1.00[AMR][1000 genomes]
rs28572568	1.00[AMR][1000 genomes]
rs28679567	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28687346	1.00[AMR][1000 genomes]
rs28808633	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28889981	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9884495	1.00[AMR][1000 genomes]
rs9993718	1.00[AMR][1000 genomes]
rs9993720	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9997823	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830109	chr4:148295061-148468605	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv1028958	chr4:148377752-148793485	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:148381200-148383400	Enhancers	NHEK	skin
2	chr4:148381400-148383200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr4:148381400-148383200	Enhancers	HMEC	breast
4	chr4:148381400-148383400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr4:148381600-148383400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr4:148382400-148383000	Enhancers	NH-A	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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